Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0342 ATGGACAAGCTTGCTACCACGGTTTCGATTTGCTGCTTACTTTTGTTCCTGTCTTTACCAGTGATGTCTCGAGAAGTTGAAGATGAGAGAGAGTTTAGTTACGAGGAAGAGAGCGAGAACGGACCGTCTCATTGGGGAGACATACACCCTGAATGGAGTGTGTGCAACAATGGATCCATGCAGTCACCGATTGATCTATTGAATGAAAGGGTTGAAATAGTATCCCAGTTAGGGAGGCTGCAGATGAACTACCAACCCTCCAATGCCACTATTAGGAATAGGGGCCACGATATCATGCTAGAATGGGTTTCTGGCGCAGGTTATCTTCAAATTAATGAAACTAAGTACGTACTCAATCAATGCCACTGGCATTCTCCCTCTGAACACACCATAGATGGCAAAAGGTTTGATCTAGAGTTACACTTGGTGCACGAAACTCCATCTGGACAAACAACTGTGATAGGAATACTGTACAAGATTGGAAGACCAGATTCTTTTCTGTCATCGTTAACGAGTCATATAAAGAACATTTCTGAGAGCACGGAAGCAGAAAGAGTGGTCGGTGTAGTTGACCCTAGGCAAATCAAAATTTTTTACAAGCAGTATTACAGGTATATGGGTTCGCTGACAATTCCTCCTTGCACTGAGAATGTTTCTTGGACGATCGTTAAAGAGATACGATCCGTTTCAAAGGAACAGGTTAGATTGCTTCGAACCGCTGTTGATGATGAATCAGAAAGTAACGCAAGGCCACTGCAACTAATAAATAACCGCTTGCTGCAACTTTATCGGCAAAAATATATTAAACATTGA 813 0.4244 MDKLATTVSICCLLLFLSLPVMSREVEDEREFSYEEESENGPSHWGDIHPEWSVCNNGSMQSPIDLLNERVEIVSQLGRLQMNYQPSNATIRNRGHDIMLEWVSGAGYLQINETKYVLNQCHWHSPSEHTIDGKRFDLELHLVHETPSGQTTVIGILYKIGRPDSFLSSLTSHIKNISESTEAERVVGVVDPRQIKIFYKQYYRYMGSLTIPPCTENVSWTIVKEIRSVSKEQVRLLRTAVDDESESNARPLQLINNRLLQLYRQKYIKH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0342 270 ProSiteProfiles Alpha-carbonic anhydrases profile. 30 264 IPR001148 -
Vra4g0342 270 Gene3D Alpha carbonic anhydrase 28 269 IPR036398 -
Vra4g0342 270 CDD alpha_CA_prokaryotic_like 41 259 IPR041891 -
Vra4g0342 270 PANTHER CARBONIC ANHYDRASE 20 267 IPR023561 GO:0004089|GO:0008270
Vra4g0342 270 PANTHER BIFUNCTIONAL MONODEHYDROASCORBATE REDUCTASE AND CARBONIC ANHYDRASE NECTARIN-3 20 267 - -
Vra4g0342 270 SUPERFAMILY Carbonic anhydrase 31 259 IPR036398 -
Vra4g0342 270 SMART Carb_anhydrase_2a 34 264 IPR001148 -
Vra4g0342 270 Pfam Eukaryotic-type carbonic anhydrase 40 260 IPR001148 -
Vra4g0342 270 ProSitePatterns Alpha-carbonic anhydrases signature. 127 143 IPR018338 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0342 Vra-Chr4 6218210 6220507 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0342 K01674 - gmx:100810249 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0342 4 6218210 6220507 Vra4g0342 4 6218210 6220507 ECH
Vra2g0744 2 6526349 6528187 Vra4g0342 4 6218210 6220507 PCT