Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0336 ATGGTAAATAGTATTCGTTTTAGTGACAGTGCTAAGGATGAAGATAATAAATATGGGAGAGTCACACAAAATGCTGAGAAGGGAAAAAAACAATTACATCCTACTGTATCAGATGCAGCTGCTCTCAGACGGTCTCCTAGAGGGAAATCATCAAGGAGTATAAATTCTGATCCTTCAAGTACTAATAATAAGTCCAGGCAATTTAAAAAGGGAGCAACACTGATACCGGTGGATAAAAAGAGATCTGAATTGGTTGGAAAAAAGAACATGCCAAGTCCTTTGAGAAGATCTGGAAGGACTGGGAGTTACTCTTCTACTAGTAATTCTGATTCTAAAAGCTCAGGTTCATTGAATTCAAACCCTAAGCCAAAAAAAGAGAAGAGTGTGAGACAGTTGACATTTGAAGCCAAAGAAGTAAAGGAAAATGAGGAACAAGATCTTGGAACACCGCAGGTTAAAGTAAGGCGAATGACTGCCCGTATGTACCGGTCTCTCTTTGAATTGCCAAAAGAAGTGCCTGATAGGATTGACAAGTCAAATCAATGTGCCAACAATATTCGAGATAAAATTGTCCAGTGCTTTGAAGGTTGTCATTCTGATTGTGAAGTCTCCAAGAATGGTGCACTACCATCTAAAGATGGAAAGCTAAAAGAGATGAGAATTAGCTCTAGGTTGAGTGGCCCTGTGAAAGATCTGGTTGATAATACCGTAACTCTGGATTCATTGGCACCATCTAATGCTGCAACTTATGAGGCAGGTTTGACATCTGAAAGGATATTGTATGAAGATTGTATCAGGAACACTGTTAAAGATGATGGAGGTAAAAAATTGATACCTTCTGAGAGCAAGGAAATCACTGTGGGTGTGGATACAGATGTTGCTGCCACCTTGGCAAAGGCTGACAACTGCAACGTGATTTCTGATTCTGGTTTGGTATCTGAAAAGGTTCAGCCTGATCACCACAGAGAAGAAACATTTCCATCAAGCAATTCGAAGAATGGTGTGCAACTACCTCGAGATGGAAAATCAAAAGAGATGATAGTTGACCATGGGCTGAGTGATCCAATGAAAGACCTAGTTGAAAATATCGTGTCTCTAGGATTGTCAGCACCATCTAACGCTGCGACTTTTGGGACTGGTTTGGTGCCTGAAAGCATTCAGCCTAAAGTCTTAATCGGAAATAGTGTTGGGTATGATAGTAGTGGTGACAAATTGGTACCTTCTAAAAGAAAGGGAATTATGGTAGACATGGATTCAGATGTTTCTACCACATTGGCTAAGGGTAACAACTGCAACTTTGTTCCTAGTTGCAGTAGCCCTTCAGTTCTAGGCGGCAATATAATGGGGACTGATGGTTCACATTCCAAGCGGATAAGGTTGGATAATAATCCTGTAGTCAGTGAGTCTTGTAACCCTTCTACTACCGAGCTTGAAGACGGGGATTCTATTGCTGCAAGCATGCTGCAGGACTTTCAAATTGATAATGAAAAAGAAGTTGGTTTAATAACTAATTCTATGAAGAGTGTCACTCAACTGAAGGAGAGGTTGTCAAGTCATAATCCATACAGATGCAAGTCTGACTCCTTTAGGTTTGTTGAGTATTGGGTTCCTGTACAAATATCTAATCTGCAGCTTGAACAGTATTGTTCTATTTTACTGTCAAATGCTTCTATTCTGCGCTCCTCATCAAAGGTTGATAGCGTCGAGGCTGTCCATGATGTTCTTATATTAACTCGGAAGTGCTGTAGTCATCCCTATCTTGTTGGTCCAGAATTGAAACCTTCTCTTAACAAGGGTCTCAAACCGACTGAGTATCTTGATTTTGATTTAAAAGCAAGTGGCAAGTTGCAACTTCTTGATTCAATGCTTGAGGAGTTGAGAAAAAAGGATTTAAGGGTGCTCATTCTTTTTCAGTCTATTGGAGGTTCTGGAAGAGTTATAGGAAATTATTTGGAAGACCTACTTCGACAAAGATTTGGTCCAGATTCGTATGAACGAATTGATAAAAATATTCTACCTTCCAAGAGACAAGCTGCTATGAAGGAATTTAATGACAAGAACAACAAACGATTTGTGTTTTTGTTAGAAACATGTGCTTGCCTTCCAAGCATTAAATTGTCGTCTGTTGATTCTGTTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGGTCCCTTCAGAAAATAACACTTGATTCACAGTTTGAATTCATAAAAATATTCCGGTTATATTCAACTTTCACTGTTGAAGAAAAAGCCTTAATCCTTGCTAAGCAATGTAAGTCAATAATTGACTCCAATTTACAAAACATAAACTGGAGTACCAGTCATATGCTGTTGATGTGGGGTGCTTCTTGTCTATTTAATGAACTCAAAGCTTTTCATGATGGTGAAACTTCTGCATCAAATGTGAAATCCTTGTTTGGGCGACCATTTCTAAAAGAAGCAATGCATGAATTCTCATCTCTGCTATCTCAGGATGGAGAACATATTGATTCAAGCAACAGTTCAATCTTATTGAAAGTGCAGCAAAATGGGGGAACATACCACGGAAATTTTTCTTTGCATGGGGAGCTAAAACTTGGGTCACTGGATGAAGAGCCATCCCAATTTTTTTGGACAAAACTTTTGGATGGAAAACAGTTTCAGTGGAAGTATTTAAATAATTCATCTCAGCGGAGCAGGAAGAAAGTTCATCATTTTGAGAGTTCAGTCAATGGGCCTGATAATGTAAGTGAAGGAGCAGCAAAGAAGCGCAGGAAAGTTAATATTGTTGATCAGCCTTCAAAATTTGAAGATGAAAAGTTACCCGCTGGTAGCAAGGCAGGAACACCTGGAGATTTAGTGGATAGATCTCAAGGAGACAATTTTGAATCTGAGCGAAAAAGCGGACTGCATGATGAGCAGAGTAGCTTACATATTTTGCTGAAGCCAGAGATCACAAAGCTTTGTGATTTACTTCTTCTTCCGGATAAAGTCAAGAGTGTGATCGATAAATTTCTGGAATATGTTATGAATAACCATGATGTCAACAGGGAACCATTTTCAATATTACAGGCTTTTCAATTATCTCTGTGTTGGACTGCAGCTTCTTTGCTAAAGCACAAACTCGACCCCATTGCCTCTCTGATAAAATATTTGAACTTTGGGTGCAAGAAAGAAGAGGTGGACTACATTTATTCTATGCTGCGTTGTTTGAAGAAAATATTTTCATATCGCACAGGAAGTTACAATGATACGGACTCTCCAAACGCATCCAAACCATCTGATGGGGTATGTACCAGAGTTGAACAGGAGGTTGAATTGTTCAAGAAAGATATTTGTAAAAGTATTAAAGAAATTAAGAAGAAGTGCCAAAAGAAGCTGAAGAAGCTATGCCTTTTGCAAGAGGAAGAGAAGCAAAGGTTGAAGGCACATACTGAGGAGGAAGAGGCTAAATTTGAGGAAGGGTATAAACTCCAGTCAGCTGTAATACGATCCTGCTCTCCCAATGATGTTATCAGAATGGAAAAGCTTAGGGTTTTGAATCTTGAATATGAAAAAGGAATTGAAGAGCTGAAATGTCAGCATGAAACACAACTCAAGGATCTTGAGGCCAAGCAATCAGCTGACAAACAGAAGTTTCTAGAAAAGGAGGCTGCTTGGGTAGAAGATGTGGAATCTTGGGCACAAAATGAACTTTCTAAAATAGTTGCTTCAAAGGAACTTGGGACTGGGGTTGAGTCCTTCCAGACTTATGGTCAAGTACAACATGACAATGTTCTTAAGAATCACTTTGCAGAGGGAAAGGGTAAAGATGATAAGGTTAAAGCCATCACAGAGACTGTCACCGAGAATTCACCTTTATCTGATGAAAGAATTGCTAACAGGGCTGCAGTAAGTTTGTCGTGTAGAAAGGAACATTTGGGACAGCATGGGATTATCAATGCTAAAGATTCAACAGAAAATGATGGTGCGGTGAATCCTCCTTCATCCATGGAACATGAATCTGATGGAGGTGCTGTAAATGAAGTTTCACACAGAGAATTAAGATTGAGTAATGGTCCTGATAACAATACTCATTCGAGTCCGTGGCATGAAAACTCTGGAGACTCATCTAGCATACTTAATGGACATATTCCAGTTGATGAGCAAGAAACTAGAAATGAACTGGACACTGTTTGTACATTAGTTAGAGATGTACCTCCGGAAACAAGTGGGATGGTCAATTTTACCGAGTGTGTACAGGATGCATCTCCTTTGAATCCCCCGTCATCTATGACTCAAATGTCTGATGAAGGTCGACTAGAGGTCCCATGTTTAGATAGGGTTTTATCACCAAGGACTTGTCAAGCTGCTTGTTCAGGTGATGAAGGTCCAAATAATATATCCATTTCAAATCCACTTTTGGAGCAACAAATTGCTGATGGTGTTCCTTTGAGTATTCCAGCAGCTGCTGATTGTGTTGATGATATAGAGGATTTAACAGGTGCTGTGTTGGTGGCTAAAAGGACCACATCAGAAGAGCAGGAAGGAGCACCTAAAACCATGGCAGACTTGTCCCAAGAGTCTCCAGTATCCAGAACATTTAATGTCATGGATCTTCGAGAAAAAGTTGTGCAGTTATCTATGGGCTCCACTCCTGACCATGAAAAGTTTAAGGAATTGCTGCATTCTTCCGAACAATCAGAACTGGTACCTAGTACAGTTGATGCTGTACCAGCCGATCAGGTGCAACAATCACTATCTGCGGAGCTTCCGTCTTCCCACCTGAATTCAACTTATTTTCGTTTAGCAACTGAAGTTGAACATCAGCCAACTGTGGTTCCAAATCAAGATGTGCAATCGGACTCAAACTTGGAACATTCACATGGGCACCCTGCCTCATATTCAGACCCTAATACAGTTGCACCTAGTGAAGTAAGAATACAATCTACAAACACAATAAATTCTTCAATTCCTCTGGAGATCAATTATCAACATATGAGCTATTATGATCCGCTCAAAATTGAATTGGATAGAATACGAAAAGTAGCAGATCAAACAATGATAATCTATGAAAAAAAGAATATGGATTTGAAATCTGAGTTTAAAAAGGAACTAGAAGAACTCCGCCGGAAGTACGATATTAAAATTCAAGGGATTGAAACTGAATTCAAAGAAAGAAAGACGGCTCTGGATACAAGTCTTAATGTAGTTCGTATGAATAAGTTTTTGGCTGATGCTTTTAGGGCTAAATGCTCACATCTTAAACCATCGCTTACATCAGGAACGCTGCAAGATTCAAGTTTTGCGTCACAACAGTTGCTTACGCCCTCACAACAACCGAATGCTAATTGGCCATCTCTTGTTGCCGGTTCTTCTTTTGGTCCTTCTGTGACCAATCGGCAAGGTCCCTCCACAAGTGCTAGCTCTCAGCTCACATTACATCCTATACGGGCTGGTTACAGTGCATCACGATTTCCCACCAATGTTTCTGCTGCAAGATCACCAATTATCAACACCATCTCTTTGCCTGTCGAAAATCTTCAACCTGGTGGTGAGATTCGCGCCCCTGCGCCGCATCTCCAGCCTTTTAGACCGTGA 5571 0.3992 MVNSIRFSDSAKDEDNKYGRVTQNAEKGKKQLHPTVSDAAALRRSPRGKSSRSINSDPSSTNNKSRQFKKGATLIPVDKKRSELVGKKNMPSPLRRSGRTGSYSSTSNSDSKSSGSLNSNPKPKKEKSVRQLTFEAKEVKENEEQDLGTPQVKVRRMTARMYRSLFELPKEVPDRIDKSNQCANNIRDKIVQCFEGCHSDCEVSKNGALPSKDGKLKEMRISSRLSGPVKDLVDNTVTLDSLAPSNAATYEAGLTSERILYEDCIRNTVKDDGGKKLIPSESKEITVGVDTDVAATLAKADNCNVISDSGLVSEKVQPDHHREETFPSSNSKNGVQLPRDGKSKEMIVDHGLSDPMKDLVENIVSLGLSAPSNAATFGTGLVPESIQPKVLIGNSVGYDSSGDKLVPSKRKGIMVDMDSDVSTTLAKGNNCNFVPSCSSPSVLGGNIMGTDGSHSKRIRLDNNPVVSESCNPSTTELEDGDSIAASMLQDFQIDNEKEVGLITNSMKSVTQLKERLSSHNPYRCKSDSFRFVEYWVPVQISNLQLEQYCSILLSNASILRSSSKVDSVEAVHDVLILTRKCCSHPYLVGPELKPSLNKGLKPTEYLDFDLKASGKLQLLDSMLEELRKKDLRVLILFQSIGGSGRVIGNYLEDLLRQRFGPDSYERIDKNILPSKRQAAMKEFNDKNNKRFVFLLETCACLPSIKLSSVDSVIIFDSDWNPMNDIRSLQKITLDSQFEFIKIFRLYSTFTVEEKALILAKQCKSIIDSNLQNINWSTSHMLLMWGASCLFNELKAFHDGETSASNVKSLFGRPFLKEAMHEFSSLLSQDGEHIDSSNSSILLKVQQNGGTYHGNFSLHGELKLGSLDEEPSQFFWTKLLDGKQFQWKYLNNSSQRSRKKVHHFESSVNGPDNVSEGAAKKRRKVNIVDQPSKFEDEKLPAGSKAGTPGDLVDRSQGDNFESERKSGLHDEQSSLHILLKPEITKLCDLLLLPDKVKSVIDKFLEYVMNNHDVNREPFSILQAFQLSLCWTAASLLKHKLDPIASLIKYLNFGCKKEEVDYIYSMLRCLKKIFSYRTGSYNDTDSPNASKPSDGVCTRVEQEVELFKKDICKSIKEIKKKCQKKLKKLCLLQEEEKQRLKAHTEEEEAKFEEGYKLQSAVIRSCSPNDVIRMEKLRVLNLEYEKGIEELKCQHETQLKDLEAKQSADKQKFLEKEAAWVEDVESWAQNELSKIVASKELGTGVESFQTYGQVQHDNVLKNHFAEGKGKDDKVKAITETVTENSPLSDERIANRAAVSLSCRKEHLGQHGIINAKDSTENDGAVNPPSSMEHESDGGAVNEVSHRELRLSNGPDNNTHSSPWHENSGDSSSILNGHIPVDEQETRNELDTVCTLVRDVPPETSGMVNFTECVQDASPLNPPSSMTQMSDEGRLEVPCLDRVLSPRTCQAACSGDEGPNNISISNPLLEQQIADGVPLSIPAAADCVDDIEDLTGAVLVAKRTTSEEQEGAPKTMADLSQESPVSRTFNVMDLREKVVQLSMGSTPDHEKFKELLHSSEQSELVPSTVDAVPADQVQQSLSAELPSSHLNSTYFRLATEVEHQPTVVPNQDVQSDSNLEHSHGHPASYSDPNTVAPSEVRIQSTNTINSSIPLEINYQHMSYYDPLKIELDRIRKVADQTMIIYEKKNMDLKSEFKKELEELRRKYDIKIQGIETEFKERKTALDTSLNVVRMNKFLADAFRAKCSHLKPSLTSGTLQDSSFASQQLLTPSQQPNANWPSLVAGSSFGPSVTNRQGPSTSASSQLTLHPIRAGYSASRFPTNVSAARSPIINTISLPVENLQPGGEIRAPAPHLQPFRP* 1857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0336 1856 MobiDBLite consensus disorder prediction 48 69 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1347 1373 - -
Vra4g0336 1856 CDD SF2_C_SNF 613 725 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 316 339 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1606 1631 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 915 939 - -
Vra4g0336 1856 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 618 781 IPR001650 -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1763 1802 - -
Vra4g0336 1856 Gene3D - 531 761 IPR027417 -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1308 1373 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 899 967 - -
Vra4g0336 1856 Gene3D - 1659 1741 - -
Vra4g0336 1856 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 13 304 - -
Vra4g0336 1856 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 497 1856 - -
Vra4g0336 1856 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 497 1856 - -
Vra4g0336 1856 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 13 304 - -
Vra4g0336 1856 Coils Coil 1171 1205 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 95 122 - -
Vra4g0336 1856 Coils Coil 1693 1713 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1311 1325 - -
Vra4g0336 1856 Gene3D - 503 530 IPR038718 -
Vra4g0336 1856 Pfam Helicase conserved C-terminal domain 616 725 IPR001650 -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 8 33 - -
Vra4g0336 1856 MobiDBLite consensus disorder prediction 1 130 - -
Vra4g0336 1856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 776 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0336 Vra-Chr4 6085615 6109211 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0336 - K11642 var:108332924 3261.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0336 4 6085615 6109211 Vra4g0336 4 6085615 6109211 ECH
Vra4g0336 4 6085615 6109211 Vra2g0742 2 6511951 6522016 PCT