Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0318 ATGCGAATCCTTCTCCTTCTCACTCTTGCCACGCTCCTCCTCTTCTCCTCCTTCTCTTCCACCCTCTGCGCCGCCCCTCCCGCGGCCGACGACGACAATGAAGACCTCAGTTTCCTCGAAGAGGAGACCTCCCCACCGGACCACCAACACAACCACTTCGATGACGCCAATTACGACTTCGGCGACTTCGAGGACGACTCCGAGGCCTACAAGCAGCCTCAGGTTGACGAGAAAGATGTCGTCGTTTTGAAGGACAAGAATTTCAGCGACGTCATCAAGAACAACCGCTTCGTCATGGTCGAATTCTACGCGCCGTGGTGCGGTCACTGTCAGGCACTCGCGCCGGAGTACGCCGCCGCCGCCTCCGAGCTCAAGGGCGAAGATGTCATTTTGGCGAAGGTCGATGCCACGGAGGAGAATGAATTGGGGCAGCAATACGATGTGCAGGGTTTCCCCACTATCTACTTCTTCGCTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAGGATGCTATAGTAACGTGGATTAAGAAGAAAACTGGACCTGGTGTATACAACTTGACTACATTGGAGGATGCTCAACGTATTTTGGCCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTTCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAGACTGTGAATTCTGACGTGGCAAAGCTTTTCCATATTGACACCGATGCTAAGCGCCCTGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACTTAGCCACTTTGATGGCAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTTTTCGAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTTTTTGAAAATTCAATCAAGAAACAGGTGCTGCTGTTTGCGACTTCAAATGATTCAGAGAAGTTCATCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAAGGGAAAGTTGATCTTTGTATCCGTTGATCTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGAGATGGTCCAAAAGTACTTGGATACACTGGGAATGATGATGGAAGAAAATTTGTGCTTGACGGAGAGGTGACTGCTGACAGAATTAAGGCATTTGGGGAAGATTTTCTCGATGACAAGCTGAAACCATTTTACAAGTCAGATCCAATCCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGGATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATATGACAAGCTTGCGAAACATCTTCGTAGTATCGAGTCTCTTGTGATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCTAAGCCCGACGGATTCCCCACCCTTCTTTTCTTCCCAGCAGGAAACAAGAGTTTTGAACCTATTACTGTTGATACAGATCGTACTGTGGTGGCCTTCTACAAGTTCCTCAAAAAACATGCATCAATTCCATTCAAGCTCCAGAAACCAACCTCACCTACTCAATCCGAGAGCTCTGGCGCCAAGGAGAGCTCTGATGACAAAGAGAGACAGAGTAGCAATAGTGACGTGAAGGATGAATTATGA 1695 0.4655 MRILLLLTLATLLLFSSFSSTLCAAPPAADDDNEDLSFLEEETSPPDHQHNHFDDANYDFGDFEDDSEAYKQPQVDEKDVVVLKDKNFSDVIKNNRFVMVEFYAPWCGHCQALAPEYAAAASELKGEDVILAKVDATEENELGQQYDVQGFPTIYFFADGIHKPYNGQRTKDAIVTWIKKKTGPGVYNLTTLEDAQRILANETKVVLGFLNSLVGSESEELAAASRLEDDVNFYQTVNSDVAKLFHIDTDAKRPALILVKKEEEKLSHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPAVFENSIKKQVLLFATSNDSEKFIPVFQEAAKSFKGKLIFVSVDLDNEDVGKPVSEYFGISGDGPKVLGYTGNDDGRKFVLDGEVTADRIKAFGEDFLDDKLKPFYKSDPIPESNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFEPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSPTQSESSGAKESSDDKERQSSNSDVKDEL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0318 564 Gene3D Glutaredoxin 183 282 - -
Vra4g0318 564 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Vra4g0318 564 SUPERFAMILY Thioredoxin-like 187 297 IPR036249 -
Vra4g0318 564 ProSitePatterns Thioredoxin family active site. 438 456 IPR017937 -
Vra4g0318 564 ProSiteProfiles Thioredoxin domain profile. 395 525 IPR013766 -
Vra4g0318 564 MobiDBLite consensus disorder prediction 530 564 - -
Vra4g0318 564 SUPERFAMILY Thioredoxin-like 285 415 IPR036249 -
Vra4g0318 564 SUPERFAMILY Thioredoxin-like 414 525 IPR036249 -
Vra4g0318 564 SUPERFAMILY Thioredoxin-like 73 183 IPR036249 -
Vra4g0318 564 CDD PDI_b'_family 303 397 - -
Vra4g0318 564 Gene3D Glutaredoxin 413 526 - -
Vra4g0318 564 CDD PDI_a_family 81 178 - -
Vra4g0318 564 Gene3D Glutaredoxin 68 182 - -
Vra4g0318 564 MobiDBLite consensus disorder prediction 544 564 - -
Vra4g0318 564 Pfam Thioredoxin-like domain 221 392 - -
Vra4g0318 564 TIGRFAM ER_PDI_fam: protein disulfide isomerase 78 564 IPR005792 GO:0003756
Vra4g0318 564 Gene3D Glutaredoxin 283 412 - -
Vra4g0318 564 TIGRFAM pdi_dom: protein disulfide-isomerase domain 83 181 IPR005788 GO:0003756
Vra4g0318 564 CDD PDI_a_PDI_a'_C 418 520 - -
Vra4g0318 564 Pfam Thioredoxin 418 503 IPR013766 -
Vra4g0318 564 Pfam Thioredoxin 80 180 IPR013766 -
Vra4g0318 564 PRINTS Thioredoxin family signature 98 106 - -
Vra4g0318 564 PRINTS Thioredoxin family signature 106 115 - -
Vra4g0318 564 PRINTS Thioredoxin family signature 147 158 - -
Vra4g0318 564 PANTHER PROTEIN DISULFIDE ISOMERASE 6 544 - -
Vra4g0318 564 PANTHER PROTEIN DISULFIDE-ISOMERASE 6 544 - -
Vra4g0318 564 ProSiteProfiles Thioredoxin domain profile. 58 183 IPR013766 -
Vra4g0318 564 CDD PDI_b_family 186 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0318 Vra-Chr4 5878275 5882879 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0318 K09580 - gmx:100170706 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0318 4 5878275 5882879 Vra4g0318 4 5878275 5882879 ECH
Vra4g0318 4 5878275 5882879 Vra2g0718 2 6155162 6158959 ECH
Vra4g0318 4 5878275 5882879 Vra2g0718 2 6155162 6158959 PCT