Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0718 ATGCTAACTCGTGAAAGATTCCTCCTTTCGCTCTCCCTCGCCACTCTTCTCCTCTTCTCCTCCCTCTCCCTCTCTGTCTCCGACAAGCCCTCTCCAAACGACAACAAAAACAAGGAAAACGACAACGATGACGATGAAGATCTCAGTTTCCTCGAGGAACCTGACGACGTCGCCGCCACTTCGCACCGCGCCCACTTCCCAGATCCCGACCACTTCAACGAAGATGAAGACGACGACGACGACTTTGGCGACTTCTCTGGCTTCGACTCCTCCACCGAGGAGGCGTTCAAGGAGCCCGCGGTGGACGACAAGGATGTCGTCGTTTTGAAGGAGCGCAACTTCACCACCGTCATCGAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCCCCCTGGTGTGGCCACTGCCAGGCCCTTGCGCCTGAGTACGCCGCTGCCGCTACCGAGCTCAAACCCGACGGCGTTGTTTTGGCCAAGGTCGACGCCACCATCGAGAACGAATTGGCGCACGAGTACGATGTCCAGGGCTTTCCCACCGTGTTCTTCTTCGTCGATGGCGTTCACAAGCCTTATACTGGCCAAAGAACCAAAGATGGTATAGTGACATGGATCAAGAAGAAGATAGGACCTGGTGTGTCCAACATAACCACCTTGGATGAAGCTGAACGCATATTGACCGCCGAAAGTAAAGTTGTTTTGGGCTTCCTGAACTCTTTAGTTGGTGCTGAGAGTGATGAGCTAGCCGCAGCATCAAAGCTCGAGGATGGTGTCAATTTTTATCAAACTGTGGTACCTGAGGTGGCAAAGCTTTTCCATATTGATGCTAGTGTTAAACGCCCTGCTTTGATCTTGCTCAAAAAAGAGGAGGAGAAACTCAACCATTTTGATGGAAAATTTGTGAAATCTGAAATAGCTGAATTTGTATCCTCCAACAAGCTTCCTTTGGTTACAACTTTTACAAGAGAAAGTGCCCCAACAATATTTGAAAGTGAAATTAAGAAACAGTTGTTGCTGTTTGCGACTTCAAATGATACAGAGAAGTTTCTTCCAGTATTTAAAGAATCTGCAAAACTTTTTAAGGGCAAGCTGATATTTGTTCTTGTGGAAATGGATAATGAAGATGTTGGAAAGCCGGTTGCAGATTATTTTGGTATCACTGGGAATGACCCCAAAGTACTTGCATACACAGGCAATGATGATGGAAGAAAATTTTTGCTTGATGGAGATGTGTCTCTTGACAAAATAACGGCGTTTGGAAATGATTTTCTTGAAGACAAGCTAAAATCTTTCCTCAAATCAGACCCAGTTCCTGAAAGCAATGATGGTGATGTGAAAATAGTTGTTGGAAATAACTTTGATGAAATCGTCTTGGACGAGTCAAAGGATGTTCTGCTTGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCTCTGGAACCTACATACAACAAGCTTGCTAAGCATCTTCGCAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGGCTGATGGATTTCCCACTCTTCTCTTCTACCCAGCAGCAAACAAGAGTTCTGATCCTATTCCAGTTGATGTGGATCGTACAGTGGTAGCCTTTTACAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAGCCACAACTTCTGAACCCAGTAGCGATAGTTCTGATGTGAAGGAGAGCCAGAGCAGCAGCACTGATGTGAAGGATGAATTGTAA 1761 0.4673 MLTRERFLLSLSLATLLLFSSLSLSVSDKPSPNDNKNKENDNDDDEDLSFLEEPDDVAATSHRAHFPDPDHFNEDEDDDDDFGDFSGFDSSTEEAFKEPAVDDKDVVVLKERNFTTVIENNRFVMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATIENELAHEYDVQGFPTVFFFVDGVHKPYTGQRTKDGIVTWIKKKIGPGVSNITTLDEAERILTAESKVVLGFLNSLVGAESDELAAASKLEDGVNFYQTVVPEVAKLFHIDASVKRPALILLKKEEEKLNHFDGKFVKSEIAEFVSSNKLPLVTTFTRESAPTIFESEIKKQLLLFATSNDTEKFLPVFKESAKLFKGKLIFVLVEMDNEDVGKPVADYFGITGNDPKVLAYTGNDDGRKFLLDGDVSLDKITAFGNDFLEDKLKSFLKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIESIVIAKMDGTTNEHPRAKADGFPTLLFYPAANKSSDPIPVDVDRTVVAFYKFLRKHASIPFQLQKPATTSEPSSDSSDVKESQSSSTDVKDEL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0718 586 ProSiteProfiles Thioredoxin domain profile. 87 230 IPR013766 -
Vra2g0718 586 CDD PDI_b'_family 323 423 - -
Vra2g0718 586 Pfam Thioredoxin-like domain 247 420 - -
Vra2g0718 586 PRINTS Thioredoxin family signature 124 132 - -
Vra2g0718 586 PRINTS Thioredoxin family signature 132 141 - -
Vra2g0718 586 PRINTS Thioredoxin family signature 173 184 - -
Vra2g0718 586 CDD PDI_a_family 107 204 - -
Vra2g0718 586 Pfam Thioredoxin 106 206 IPR013766 -
Vra2g0718 586 Pfam Thioredoxin 444 527 IPR013766 -
Vra2g0718 586 TIGRFAM ER_PDI_fam: protein disulfide isomerase 104 586 IPR005792 GO:0003756
Vra2g0718 586 Gene3D Glutaredoxin 438 552 - -
Vra2g0718 586 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 578 - -
Vra2g0718 586 CDD PDI_a_PDI_a'_C 444 546 - -
Vra2g0718 586 SUPERFAMILY Thioredoxin-like 100 209 IPR036249 -
Vra2g0718 586 ProSiteProfiles Thioredoxin domain profile. 430 551 IPR013766 -
Vra2g0718 586 SUPERFAMILY Thioredoxin-like 311 441 IPR036249 -
Vra2g0718 586 SUPERFAMILY Thioredoxin-like 215 323 IPR036249 -
Vra2g0718 586 SUPERFAMILY Thioredoxin-like 440 551 IPR036249 -
Vra2g0718 586 ProSitePatterns Thioredoxin family active site. 464 482 IPR017937 -
Vra2g0718 586 CDD PDI_b_family 212 311 - -
Vra2g0718 586 Gene3D Glutaredoxin 209 312 - -
Vra2g0718 586 MobiDBLite consensus disorder prediction 25 84 - -
Vra2g0718 586 ProSitePatterns Thioredoxin family active site. 125 143 IPR017937 -
Vra2g0718 586 PANTHER PROTEIN DISULFIDE ISOMERASE 2 578 - -
Vra2g0718 586 Gene3D Glutaredoxin 313 437 - -
Vra2g0718 586 MobiDBLite consensus disorder prediction 56 71 - -
Vra2g0718 586 TIGRFAM pdi_dom: protein disulfide-isomerase domain 110 207 IPR005788 GO:0003756
Vra2g0718 586 Gene3D Glutaredoxin 93 208 - -
Vra2g0718 586 MobiDBLite consensus disorder prediction 556 586 - -
Vra2g0718 586 MobiDBLite consensus disorder prediction 556 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0718 Vra-Chr2 6155162 6158959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0718 K09580 - gmx:100790223 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0718 2 6155162 6158959 Vra2g0718 2 6155162 6158959 ECH
Vra4g0318 4 5878275 5882879 Vra2g0718 2 6155162 6158959 ECH
Vra4g0318 4 5878275 5882879 Vra2g0718 2 6155162 6158959 PCT