Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0280 ATGGAGGCGCAGCAGAGAAGGGGAGGAGGCGGAATGATACCGTTGTCGCCGTCGCAGACGCCGCGCTCCAGCGACAAGCCGGTGCGAGATCTGCGATCTGCGGATTCGAATTCAAACAGTCATAGCAAGTATGATAAGGAAAAAGGCGTCAATGTGCAGGTCCTCGTACGGTGCAGGCCGTTGAGTGAAGATGAGATGAGGCTGCACACACCGGTTGTGATATCGTGTAATGAAGGTAGACGGGAGGTTTCAGCTGTTCAGAGCATCGCCAACAAACAGATCGACAGAACCTTCGCGTTTGACAAGGTGTTTGGCCCTAACTCTCAACAGAAAGAACTGTATGAGCAGGCAGTGTCTCCTATTGTGTATGAAGTGCTCGAAGGTTATAATTGCACTATTTTTGCGTATGGACAGACCGGGACAGGGAAGACTTACACAATGGAAGGAGGTGGAAGAAAGAAGAATGGTGAATTTCCGAGTGATGCTGGTGTCATCCCGAGAGCCGTGAAGCAGATTTTTGATATATTGGAAGCTCAGAATGCTGAGTATAACATGAAAGTAACGTTTCTAGAGCTTTACAACGAGGAAATAACCGATCTTTTGGCCCCTGAAGAAACAACAAAATTTATAGATGACAAATCTAGGAAACCAATTGCTCTAATGGAGGACGGGAAGGGGGGTGTTTTTGTTAGGGGTTTGGAAGAAGAGATTGTTTGCACTGCCAATGAAATTTATAAGATATTGGAAAAGGGTTCTGCAAAGAGGCGTACAGCTGAGACTCTTCTCAACAAACAAAGCAGTCGTTCTCACTCCATATTTTCTATCACAATTCACATTAAGGAATGCACGCCAGAGGGTGAGGAAATGATTAAATGCGGGAAGCTAAATCTCGTGGATCTTGCAGGCTCTGAGAATATTTCACGATCTGGTGCGAGAGAGAGTAGAGCAAGGGAGGCTGGGGAGATTAATAAAAGCTTGCTTACACTTGGTAGAGTGATTAATGCTCTAGTTGAGCACTCGGGTCATGTTCCATATAGGGATAGCAAATTAACCAGATTGTTGCGGGATTCCTTGGGTGGTAAAACCAAAACGTGCATTATTGCAACAATATCACCTTCCATTCACTGTCTGGAAGAAACCCTTAGTACCTTGGATTATGCACACCGTGCAAAAAATATCAAGAACAAACCAGAGATTAATCAGAAAATGATGAAATCTGCAATGATTAAGGATTTGTATTCTGAAATTGACAGACTAAAGCAAGAGGTGTATGCAGCACGAGAGAAAAATGGAATCTATATACCTCGCGATCGCTACCTTCATGAAGAAGCAGAGAAGAAGGCAATGGCTGAGAAGATAGAACGCATGGAACTAGAAGCAGAGTCTAAGGATAAGCAATTGATGGAGCTTCAAGAACTCTACAATTCTCAGCAACTTTTGACTGCTGAATTAAGTATTAAACTTGAAAAAACTGAGAAAAGTCTAGAAGAAACCGAGCAGTCGCTGTTTGATCTTGAGGAGAGGCACAAACAAGCAAATGCAACAATTAAGGAAAAGGAATTTTTGATATCAAATCTCCTAAAATCTGAGAAAGAACTTGTGGAGCGTGCTATTGAACTACGAGCAGAGCTTGAGAATGCTGCATCAGATGTGTCAAACCTGTTTTCTAAAATTGAGCGGAAGGATAAAATTGAAGAGGGAAATAGAATACTTATCCAGAAATTCCAGTCTCAGTTAGCTCAACAACTTGAAGTTTTGCACAAGACAGTTTCAGCTTCAGTAATGCATCAAGAACAGCAACTGAAGGACATGGATGAAGATATGCAGTCTTTTGTATCAATGAAAGCAAAGGCTACTGAAGATCTTAGAGAACGAGTAGGAAAGTTGAAAAACATGTATGGTTCTGGTATCAAAGCTCTGGATGATTTAGCTGAGGAGCTTAAAGTAAATAACCAGTTAACTTACGATGACTTGAAATCTGAAGTAGCCAAGCATTCATCTGCCTTGGAGGATCTTTTCAAAGGAATTGCCTTAGAAGCTGATTCATTACTAAATGATCTTCAAAGTAGTCTTCACAAGCAAGAGGCGAATTTAACAGCTTATGCTCGTCAACAACAAGAGGCGCATGCTAGAGCAGTAGAGACTACACGTGTGGTTTCTAAAATAACGGTGAACTTTTTTGAGACAATAGACAGGCATGCATCTAGTCTGACGGAAATTGTGGAAGAAGCACAATTGGTAAATGATCAGAAATTGGGTGAACTTGAGAAGAAGTTTGAGGAGTGTACTGCCTATGAAGAAAAACAACTATTGGAGAAAGTGGCAGAAATGCTAGCAAGTTCAAATGCAAGAAAGAAACAATTGGTTCAAATGGCAGTCAATGATCTTCGAGAAAGTGCAAACTGTAGAACCAGTAAGCTGCGACAAGAAGCATTAACCATGCAGGATTCCACTTCTTCTGTCAAGACAGAATGGAGAGTTCATATGGAAAAAACAGAATCCAACTATCAGGAAGACACCTCTGCTGTAGAACATGGGAAGAAAGACCTTGTGGAGGTTCTTCAAATCTGCCTCAACAAGGCAAAAGTAGGTTCACAACAATGGAGAAAAGCTCAAGAGTCTTTGCTTGGTCTGGAGAAGAGAAATGCTGCTTCAGTGGATACTATTGTTAGGGGAGGAATTGAAGCTAATCAAACTCTACGTTCTCGTTTCTCAAGTGCCGTGACAACTACACTCGAAGATGCAGGAATAGCAAACAAGGATATTAACTCATCCATTGATCATTCGTTGCAACTTGATCATGAAGCTTGTGGGAATCTGAACTCTATGATTATTCCTTGCTGTGGTGATTTGAGAGAACTAAAGGGTGGTCATTACCACAAAATTGTAGAGATAACCGAACATGCAGGGGAATGTCTTCTCAACGAATACGTGGTCGACGAACCATCTTGTTCAACACCAAGAAAGAGACTCTTCAATTTGCCTAGTGTTTCATCCATAGAAGAACTAAGAACCCCATCGTTTGAGGAGTTGTTGAGGTCATTCTGGGATGCAAGATCTCCAAAACATGCAAATGGAGATGTTAAACACATCGGGGCATATGAAGCCACTCAATCAGTTAGAGATTCCAGAGTTCCTCTTACTGCTATTAACTAG 3156 0.4179 MEAQQRRGGGGMIPLSPSQTPRSSDKPVRDLRSADSNSNSHSKYDKEKGVNVQVLVRCRPLSEDEMRLHTPVVISCNEGRREVSAVQSIANKQIDRTFAFDKVFGPNSQQKELYEQAVSPIVYEVLEGYNCTIFAYGQTGTGKTYTMEGGGRKKNGEFPSDAGVIPRAVKQIFDILEAQNAEYNMKVTFLELYNEEITDLLAPEETTKFIDDKSRKPIALMEDGKGGVFVRGLEEEIVCTANEIYKILEKGSAKRRTAETLLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGARESRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATISPSIHCLEETLSTLDYAHRAKNIKNKPEINQKMMKSAMIKDLYSEIDRLKQEVYAAREKNGIYIPRDRYLHEEAEKKAMAEKIERMELEAESKDKQLMELQELYNSQQLLTAELSIKLEKTEKSLEETEQSLFDLEERHKQANATIKEKEFLISNLLKSEKELVERAIELRAELENAASDVSNLFSKIERKDKIEEGNRILIQKFQSQLAQQLEVLHKTVSASVMHQEQQLKDMDEDMQSFVSMKAKATEDLRERVGKLKNMYGSGIKALDDLAEELKVNNQLTYDDLKSEVAKHSSALEDLFKGIALEADSLLNDLQSSLHKQEANLTAYARQQQEAHARAVETTRVVSKITVNFFETIDRHASSLTEIVEEAQLVNDQKLGELEKKFEECTAYEEKQLLEKVAEMLASSNARKKQLVQMAVNDLRESANCRTSKLRQEALTMQDSTSSVKTEWRVHMEKTESNYQEDTSAVEHGKKDLVEVLQICLNKAKVGSQQWRKAQESLLGLEKRNAASVDTIVRGGIEANQTLRSRFSSAVTTTLEDAGIANKDINSSIDHSLQLDHEACGNLNSMIIPCCGDLRELKGGHYHKIVEITEHAGECLLNEYVVDEPSCSTPRKRLFNLPSVSSIEELRTPSFEELLRSFWDARSPKHANGDVKHIGAYEATQSVRDSRVPLTAIN* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0280 1051 Gene3D Kinesin motor domain 47 433 IPR036961 -
Vra4g0280 1051 PRINTS Kinesin heavy chain signature 128 149 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 PRINTS Kinesin heavy chain signature 260 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 PRINTS Kinesin heavy chain signature 294 312 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 PRINTS Kinesin heavy chain signature 343 364 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 Coils Coil 527 561 - -
Vra4g0280 1051 PANTHER KINESIN-LIKE PROTEIN KIF11 1 1051 - -
Vra4g0280 1051 PANTHER KINESIN-LIKE PROTEIN KIN-5D 1 1051 - -
Vra4g0280 1051 Pfam Kinesin motor domain 57 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 Coils Coil 684 704 - -
Vra4g0280 1051 ProSiteProfiles Kinesin motor domain profile. 51 393 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 MobiDBLite consensus disorder prediction 1 46 - -
Vra4g0280 1051 SMART kinesin_4 49 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vra4g0280 1051 Coils Coil 409 429 - -
Vra4g0280 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 433 IPR027417 -
Vra4g0280 1051 Coils Coil 439 473 - -
Vra4g0280 1051 ProSitePatterns Kinesin motor domain signature. 293 304 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vra4g0280 1051 Coils Coil 481 515 - -
Vra4g0280 1051 CDD KISc_BimC_Eg5 49 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0280 Vra-Chr4 5434141 5440253 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0280 51 423 Miscellaneous Gene Families AT5G06670 37.731 1.86e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0280 K10398 - gmx:100816693 1926.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0280 4 5434141 5440253 Vra4g0280 4 5434141 5440253 ECH
Vra4g0280 4 5434141 5440253 Vra2g0657 2 5323419 5329575 PCT