LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra2g0657	ATGGAGCCTCAGCAGAGAAGAGGAGGATTGGTGCCGGTATCGCCGTCGCAGACGGCGCGCTCGGGCGACAAGCTGGCGCGAGATCTGCGACCTGCGGATTCTAGTTCCAGTGGTCACAGCAAGTTCGATAAGGACAAAGGCGTCAATGTGCAGGTTCTCGTTCGTTGCAGGCCGTTGGGTGAAGATGAAGCGAGGTTGAACACGCCGATCGTGATTTCTTGTAACGAAGGTAGAAGAGAGGTTTCGGCTGTGCAGAATATAGCCAACAAACAGATCGACAGAACCTTCGCATTCGACAAGGTTTTTGGTCCGAACTCCAAGCAGAAAGAACTATTTGAGCAGGCCATGTCTCCTATTGTGAATGAAGTGCTTGAAGGCTATAACTGCACCATTTTTGCGTACGGTCAAACAGGGACAGGGAAGACGTACACAATGGAAGGAGGTGCAAGAAAAAAGAATGGAGAGTTTCCCAGTGATGCTGGTGTCATCCCAAGAGCTGTGAAGCAGATTTTTGATATATTAGAATCTCAGACTGCCGAGTATAGCATGAAAGTAACGTTTCTAGAGCTTTACAACGAGGAGATAACTGATCTTTTGGCCCCTGAGGAGACTTTAAAATTTGTGGATGACAAATCTAAGAAACCAATAGCTCTCATGGAGGATGGAAAGGGGGGAGTTTTTGTTAGAGGTTTAGAGGAAGAGGTTGTTTGCACTGCAAATGAAATTTATAAGATATTGGAAAAGGGCTCTGCGAAAAGGCGAACAGCTGAGACTTTTCTCAACAAACAAAGCAGTCGCTCCCACTCCATATTTTCTATCACAATTCACATTAAGGAGTGTACTCCAGAGGGTGAAGAAATGATTAAATGTGGGAAGCTAAACCTTGTGGACCTTGCAGGCTCTGAGAATATTTCACGTTCGGGTGCAAGAGAGGGAAGAGCAAGGGAAGCTGGGGAGATAAATAAAAGCTTGCTTACTCTAGGTCGAGTGATTAATGCTTTAGTGGAGCATTCAGGTCATGTTCCTTATAGGGATAGCAAATTAACAAGATTGTTAAGGGATTCCTTGGGCGGTAAAACAAAGACGTGCATCGTTGCTACAATATCACCTTCTATTCACTGTCTGGACGAAACTCTCAGTACCTTGGATTATGCACACCGTGCCAAAAATATCAAGAACAAACCAGAGATCAATCAGAAGATGGTGAAATCTGCACTCATTAAGGATCTGTATTCTGAAATTGACAGGCTGAAGCAAGAGGTGTATGCTGCAAGAGAGAAGAATGGAATTTATATACCGCGTGACCGTCATCTTCAAGAAGAAGCGGAGAAGAAGGCCATGGTTGAAAAGATAGAACTGATGGAACAAGAAGCAGAGTCCAAGGATAAGCAACTGATGGAACTTCAAGAACTCTACAATCGTCAGCAACTTTTGACCGTCGAGCTAAGTGATAAACTAGAAAAAACTGAGAAAAGTCTTGAAGAAACTGAGCAGTCATTATTTGAACTTGAGGAAAAGCACACACAAGCAAATGCAACAATTAAGGAAAAGGAATTTCTAATATTTAATCTACTGAAATCTGAAAAAAAACTCGTGGAGCATGCAATTGAGCTACGATCAGATCTTAAGAATGCTGCATCCGATGTGTCGAACCTATTTTCTACAATTGAACGGAAGGATAAGATTGCAGAAGGAAACAGAATACTTATCCAGAAATTCCAGTCTCAGTTAGCTCAACAGCTAGAAGATCTGCACAAGGCTGTTGCAGCATCTGTAATGCAACAGGAGCAGCAACTGAAGGCAATGGAACAAGATATGCACTCTTTCGTATCAACAAAGGCAGAGGGTATTGAAAATCTTAGAGTACAGGTAGGAAAACTAAAAAATATGTATGGTTCCGGCATTAGAGTTCTCGACAGTTTAGCTGAGGAGCTTAAGGGAAATAACCAGTTAAAATTTGGAGAGTTGAATTCTGAAGTAGCCAAGCATTCATCCGCCTTGGAAGATCTGTTTAAAGGAATTACATTAGAAGCTGATTCATTACTGAAGGATCTTCAAAGTAGTCTCCAAAAGCAAGAGGCCAAGTTAACTGATTATGCTCGACAACAGGAAGCGGCACATGCCAGAGCAGTCGAGAATACACGTGCGGTATCTAAAATAACTCTGAACTTCTTTGAGACATTACACATGCATGCATCCAATTTGATCCAAATTGTGGAAGAATCACAATATACCAATGACCAGAAATTGTACGAACTTCAAAAGAAGTTTGAGGAATGTACTGCATTTGAAGAAAAACAAATGTTGGAGAAAGTGGCAGAAATGCTTGCTAGCTCTAGTTCTAGGAAGAAAAAACTGGTCCAAATGGCAGTTAATGATCTTCGAGAGAGTGCAAACACTAAAATCAGTAAGCTTAGGCAAGAAACGTTAACCATGCAAGATTCCACTTCTTCTATTAAAGCAGAATGGAAAATTCACATGGAAAAATCGGAGTCCAACTATCATGAGGATACTTCAGCGATAGAATCTGGAAAGAATGACCTTGTGAAGGTTCTCCAGTACTGCCGCAAGAAAGCCGAACTAGGCGCACAACAATGGAGAAATGCTCAAGAGTCCATACTTAGTCAAGAGAAGAGAAATGCTGCTTCTGTTGACTCCATTATTCGAGGAGGAATGGAAGCAAATAATCTCGTACGAGCCCGATTCTCAGGAGCTGCGTCAACTACTCTTGAAGATGCAGAAATAGCAAACAAGGATATTAAATCTTCCATTGAACATTCATTGCAACTTGATCGCGACGCCTGTGGTAATATAAACTCTAGGATTATCCCATGCTGTGGTGACTTGAGAGAATTGAATGGTGGTCATTACCATAGAATCGTAGAGATAACTGAAAATGCAGGGAAATGTCTTCTCAGAGAATACGTGGTAGATGAACCATCCTGTTCAACACCCAAAAGGAGACCCTTCAATCTGCCCAGTGTTTCGTCCATAGAAGAACTAAGGACCCCACCATTTGAGGAACTACTGAAATCATTCGGGGATTCTAAATCTTCAAAAAATGCAAATGGTGACGTTAGATACATTGGGGCATATGAATCTGCACAATCTGTAAGGGATTCCAGACTTCCCCTTATAGCAATCAACTAG	3150	0.4206	MEPQQRRGGLVPVSPSQTARSGDKLARDLRPADSSSSGHSKFDKDKGVNVQVLVRCRPLGEDEARLNTPIVISCNEGRREVSAVQNIANKQIDRTFAFDKVFGPNSKQKELFEQAMSPIVNEVLEGYNCTIFAYGQTGTGKTYTMEGGARKKNGEFPSDAGVIPRAVKQIFDILESQTAEYSMKVTFLELYNEEITDLLAPEETLKFVDDKSKKPIALMEDGKGGVFVRGLEEEVVCTANEIYKILEKGSAKRRTAETFLNKQSSRSHSIFSITIHIKECTPEGEEMIKCGKLNLVDLAGSENISRSGAREGRAREAGEINKSLLTLGRVINALVEHSGHVPYRDSKLTRLLRDSLGGKTKTCIVATISPSIHCLDETLSTLDYAHRAKNIKNKPEINQKMVKSALIKDLYSEIDRLKQEVYAAREKNGIYIPRDRHLQEEAEKKAMVEKIELMEQEAESKDKQLMELQELYNRQQLLTVELSDKLEKTEKSLEETEQSLFELEEKHTQANATIKEKEFLIFNLLKSEKKLVEHAIELRSDLKNAASDVSNLFSTIERKDKIAEGNRILIQKFQSQLAQQLEDLHKAVAASVMQQEQQLKAMEQDMHSFVSTKAEGIENLRVQVGKLKNMYGSGIRVLDSLAEELKGNNQLKFGELNSEVAKHSSALEDLFKGITLEADSLLKDLQSSLQKQEAKLTDYARQQEAAHARAVENTRAVSKITLNFFETLHMHASNLIQIVEESQYTNDQKLYELQKKFEECTAFEEKQMLEKVAEMLASSSSRKKKLVQMAVNDLRESANTKISKLRQETLTMQDSTSSIKAEWKIHMEKSESNYHEDTSAIESGKNDLVKVLQYCRKKAELGAQQWRNAQESILSQEKRNAASVDSIIRGGMEANNLVRARFSGAASTTLEDAEIANKDIKSSIEHSLQLDRDACGNINSRIIPCCGDLRELNGGHYHRIVEITENAGKCLLREYVVDEPSCSTPKRRPFNLPSVSSIEELRTPPFEELLKSFGDSKSSKNANGDVRYIGAYESAQSVRDSRLPLIAIN*	1050

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra2g0657	1049	Coils	Coil	407	427	-	-
	Vra2g0657	1049	Coils	Coil	437	471	-	-
	Vra2g0657	1049	PANTHER	KINESIN-LIKE PROTEIN KIF11	1	1049	-	-
	Vra2g0657	1049	Coils	Coil	479	513	-	-
	Vra2g0657	1049	MobiDBLite	consensus disorder prediction	1	43	-	-
	Vra2g0657	1049	PRINTS	Kinesin heavy chain signature	126	147	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	PRINTS	Kinesin heavy chain signature	258	275	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	PRINTS	Kinesin heavy chain signature	292	310	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	PRINTS	Kinesin heavy chain signature	341	362	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	Coils	Coil	585	605	-	-
	Vra2g0657	1049	CDD	KISc_BimC_Eg5	47	400	-	-
	Vra2g0657	1049	PANTHER	KINESIN-LIKE PROTEIN KIN-5D	1	1049	-	-
	Vra2g0657	1049	ProSitePatterns	Kinesin motor domain signature.	291	302	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
	Vra2g0657	1049	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	49	431	IPR027417	-
	Vra2g0657	1049	ProSiteProfiles	Kinesin motor domain profile.	49	391	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	Gene3D	Kinesin motor domain	45	431	IPR036961	-
	Vra2g0657	1049	Pfam	Kinesin motor domain	55	391	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Vra2g0657	1049	Coils	Coil	682	702	-	-
	Vra2g0657	1049	SMART	kinesin_4	47	399	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra2g0657	Vra-Chr2	5323419	5329575	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra2g0657	49	421	Miscellaneous Gene Families	AT5G06670	37.895	9.43e-66	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra2g0657	K10398		-	gmx:100784725	1821.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra2g0657	2	5323419	5329575	Vra2g0657	2	5323419	5329575	ECH
	Vra4g0280	4	5434141	5440253	Vra2g0657	2	5323419	5329575	PCT