Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0273 ATGTCGAGCTTACTTAATTCTTCCCTGAACGGATCTGCTTCAAATCTTCCAGATGGTGCTGCTGGACGTTCCTTTGCTACGTCTTTTTCTGGTCAGTCTGGTGTAGCCTCGCCAGTTTTTCATCACTCTGGTTCTATTCAGGGATTGCACAACATTCATGGGAGCTATAATGTACCCAATATGCCTAGTTCACTTACATCAAGAAACTCAACGTTAAATAGTTTACCAACTGGGGGAGGAGTTCAACAACCTTCAGCAAGCCTTTCAAGTGGACGATTTGCATCAAATAATCTACCCGTTGCTCTGTCACAGCTATCTCATGGAAGTTCCCATGGACATTCAGGAGTCAACAGTAGAGGAGGTATAAGTGTTATAGGAAATCCTGGATTTAATAGTAGCACAAATGGAGTTGCTGGTCCTATTCCTGGGATTCTTCCAACTTCTGCTGCAATTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTCGAATCACTAGTTCGATGGGAAACATGGTTGGTGGGGGGAACATTGGGAGGATAAGCTCTGGAGGATTGTCTGTTCCTGGCCTCGCTTCTCGTATAAATTTAGGTGGAAATGCTGGATCTGGTGGTTTAGGTGTGCAAGGACAGAATCGATTGATAAGTACTGTTCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCCTATCCTAGTGCTGGAGGTCCACTTTCTCAAAGTCATGTTCAAACAGTAAATAACTTGAACTCTATGGTGATGCTGAATGATGTGAATTCCGGTGACAGTTCACCATTTGATATCAATGACTTCCCTCAACTGACCACTCATCCTAGTTCTGCTGGTGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTATTGGAGTTAGTCCCATTGTCCAACAAAACCAAGAGTTTAGTATTCAAAAGGAAGACTTCCCAGCTTTACCAGGATTCAAAGATTACAAGAACGAAAGCCTTATTTCACTAGGTGGTAATGCCGATTTTGCTATGGATATGTACCAGAAAGAACAACTTCATGATAACACCGTGTCAATGATGCAATCTCAGCATTTCTCTCAGATGGGGCGATCTTCTGGTTTCAGTTTGGGGGGATCATATCCATCACATCGCACACAGCAGCATACCCCTTCAGTCAGTAGTAACGGTGTCTCCTTTTCATCTGTAAACAGTCAAGACCTCCATTTGCATGGAACAGATATGTTTCCTTCTTCACATTCAACTTATCATTCCCAGACCAGTGGACCTCCTGGCATTGGACTAAGGCCTTTAAATTCTCCAAATACGGGTATGGGTTCATATGACCAGCTTATTCAGCAGTATCAACAGCAGCAGAACCAGTCGCAATTCCGCCTTCAGCAAATGTCAGCTGCAAATCAGTCTCTTAGGGATCAGGGCATGAAGTCCATGCAAAGTGCGCAATCTAGTCCAGATCCATTTGGTGCCCTTGGCTTGTTCAGTGTAGTCCATATAAGTGATCCTGACCTGAAATATCTTGCTCATGGGATTGATCTGACAACGCTTGGGTTGAATTTGAATTCATCAGAAAATCTTTACAAGACTTTTCGATCACCATGGTCTGATGAACCGGCCAAGGGTGATCCAGAGTTCAGTGTGCTACAATGTTATTATGCTAAACAGCCGCCTGCTCTACATCAAGGTTATTTTTTGAAGTTTTCGGTGGAAACTTTGTTTTACATATTTTACAGCATGCCCAAGGATGAAGCACAACTATATGCAGCAAATGAACTTTACAAACGAGGTTGGTTTTATCATAAAGAACACCGTTTTTGGTTTATAAGAGTTGCCAACATGGAGCCGCTTGTCAAAACAAATACATACGAGAGAGGATCTTACCATTGTTTTGATCCAAATACCTTTGAAACAGTCCGGAAGGATAATTTTGTTCTTCATTATGAATTGGTGGAAAAGCGACCGTCTTTACCTCAACGTTAA 2016 0.4276 MSSLLNSSLNGSASNLPDGAAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGSYNVPNMPSSLTSRNSTLNSLPTGGGVQQPSASLSSGRFASNNLPVALSQLSHGSSHGHSGVNSRGGISVIGNPGFNSSTNGVAGPIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVGGGNIGRISSGGLSVPGLASRINLGGNAGSGGLGVQGQNRLISTVLPQGSPQVISMLGNSYPSAGGPLSQSHVQTVNNLNSMVMLNDVNSGDSSPFDINDFPQLTTHPSSAGGPQGQLGSLRKQGIGVSPIVQQNQEFSIQKEDFPALPGFKDYKNESLISLGGNADFAMDMYQKEQLHDNTVSMMQSQHFSQMGRSSGFSLGGSYPSHRTQQHTPSVSSNGVSFSSVNSQDLHLHGTDMFPSSHSTYHSQTSGPPGIGLRPLNSPNTGMGSYDQLIQQYQQQQNQSQFRLQQMSAANQSLRDQGMKSMQSAQSSPDPFGALGLFSVVHISDPDLKYLAHGIDLTTLGLNLNSSENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQPPALHQGYFLKFSVETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRFWFIRVANMEPLVKTNTYERGSYHCFDPNTFETVRKDNFVLHYELVEKRPSLPQR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0273 671 Pfam NOT2 / NOT3 / NOT5 family 540 660 IPR007282 GO:0006355
Vra4g0273 671 MobiDBLite consensus disorder prediction 60 92 - -
Vra4g0273 671 MobiDBLite consensus disorder prediction 281 298 - -
Vra4g0273 671 MobiDBLite consensus disorder prediction 421 439 - -
Vra4g0273 671 MobiDBLite consensus disorder prediction 375 405 - -
Vra4g0273 671 Gene3D - 488 671 IPR038635 -
Vra4g0273 671 PANTHER CCR4 NOT-RELATED 2 670 IPR040168 GO:0030015
Vra4g0273 671 MobiDBLite consensus disorder prediction 281 300 - -
Vra4g0273 671 MobiDBLite consensus disorder prediction 421 453 - -
Vra4g0273 671 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0273 Vra-Chr4 5364127 5373779 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0273 K12605 - gmx:100806559 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0273 4 5364127 5373779 Vra2g0652 2 5269487 5279179 PCT