Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0652 ATGTCGGGGTTACTTAATTCTTCTCTGAATGGATCTGCTTCAAATCTTCCAGATGGTGCCNGACGATCTTTTGCGACATCGTTTTCTGGAGCTATTCAAGGATTGCACAATATTCATGGGAGCTTTAATGTTCCCAACATGCCCGGTTCACTCACATCGAGAAATTCAACTATAAATAATGTGCCATCTGGTGGTGTTCAACATTCCACTGGAAGCCTTTCTAGTGGAAGATTTACATCCAACAATCTACCAGTTGCATTGTCTCAGCTATCTCATGGAAGCTCCCACGGACATTCAGGAGTCACCAATAGAGGAGGTATAAGTGTTGTAGGAAACCCTGGATTTAGTAGTAGCACAAATGGAGTTGGTGGTTCTATTCCTGGGATTCTTCCTACATCTGGTGCAATTGGTAACCGAAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCTAGAATCACTAGTTCTGTGGGAAACATGGTTGGAGGGAATATCGGAAGGACTGGTGGAGGATTGTCTGTGCCTGCTCTTGCATCTCGTCTAAATTTGGGTGCAAACAGTGGATCCAGTGGTTTAGGTATGCAAGGACAGAATCGATTAATGAGTGGTGTGCTTCCACAAGGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCCAGCGCTGGAGGTCCACTTTCCCAAAGCCATGTGCAAGCAGTAAGTAACTTGAACTCTATGGGAATGCTGAATGATGTGAATACCAATGACAGCTCCCCTTTTGATATCAATGACTTCCCTCAACTGACAAGTCGTCCAAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGGTTCTTTACGAAAACAGGGTCTTGGCGTCAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAGAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGGCGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTACCAATGATGCAATCACAGCATTTCTCTATGGGAAGGTCAGCTGGTTTCAGCTTGGGGGGTACATATTCGTCACATCGAGCACAACAGCAACAGCATGCTCCTTCTGTCAGTAGTGGCAATGTCTCTTTNTCATCTGTTAACAACCAGGATCTTCTCCATTTGCATGGATCAGATATTTTCCCTTCTCCACATTCAACCTATCATTCACAGACCAGTGGACCTCCTGGTATTGGATTAAGGCCTTTAAATTCTCCGAATACAGTTTCTGGTATGGGTTCATACGACCAGCTTATTCAGCAATATCAACAGCATCAAAACCAGTCGCAGTTCCGCCTACAAATGTCAGCTGTAAATCAATCTTTTAGGGATCAGGGCATGAAGTCTATTCAAACCACACAACCAGATCCATTTGGTTTGCTTGGCTTGTTAAGTGTGATCAGGATGAGTGATCCTGACCTGACGTCTCTTGCTCTTGGAATTGATCTAACTACCTTGGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACCTTTGGTTCTCCATGGTCTGATGAACCTGCTAAGGGCGATCCAGAGTTTAATGTGCCANAATGTTATTATGCTAAACAGCCACCTNCTCTACATCAAGGATACTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACATATTTTACAGCATGCCCAAAGATGAAGCACAATTATATGCCTCCAATGAGCTTTACAACAGAGGTTGGTTTTATCACAAGGAACATCGTTTGTGGTTTATAAGAGTTCCCAACATGGAGCCGCTGGTTAAAACAAACACATACGAGAGGGGATCTTACCACTGTTTCGAACCAAGCATATTTGAAACCGTCCGCAAGGATAATTTTGTTCTTCATTATGAAATGTTGGAAAAGAGACCCCATCTGCCTCAACATTGA 1938 0.4293 MSGLLNSSLNGSASNLPDGAXRSFATSFSGAIQGLHNIHGSFNVPNMPGSLTSRNSTINNVPSGGVQHSTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGISVVGNPGFSSSTNGVGGSIPGILPTSGAIGNRNAVPGLGVSPILGNAGPRITSSVGNMVGGNIGRTGGGLSVPALASRLNLGANSGSSGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHVQAVSNLNSMGMLNDVNTNDSSPFDINDFPQLTSRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNAVPMMQSQHFSMGRSAGFSLGGTYSSHRAQQQQHAPSVSSGNVSXSSVNNQDLLHLHGSDIFPSPHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTTQPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKGDPEFNVPXCYYAKQPPXLHQGYFSKFSVETLFYIFYSMPKDEAQLYASNELYNRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLEKRPHLPQH* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0652 645 MobiDBLite consensus disorder prediction 348 389 - -
Vra2g0652 645 MobiDBLite consensus disorder prediction 399 439 - -
Vra2g0652 645 Gene3D - 464 645 IPR038635 -
Vra2g0652 645 PANTHER CCR4 NOT-RELATED 2 645 IPR040168 GO:0030015
Vra2g0652 645 Pfam NOT2 / NOT3 / NOT5 family 514 636 IPR007282 GO:0006355
Vra2g0652 645 MobiDBLite consensus disorder prediction 247 301 - -
Vra2g0652 645 MobiDBLite consensus disorder prediction 247 281 - -
Vra2g0652 645 MobiDBLite consensus disorder prediction 348 439 - -
Vra2g0652 645 MobiDBLite consensus disorder prediction 42 78 - -
Vra2g0652 645 PANTHER NOT TRANSCRIPTION COMPLEX SUBUNIT VIP2 ISOFORM X1-RELATED 2 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0652 Vra-Chr2 5269487 5279179 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0652 K12605 - gmx:100783662 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0652 2 5269487 5279179 Vra2g0652 2 5269487 5279179 ECH
Vra4g0273 4 5364127 5373779 Vra2g0652 2 5269487 5279179 PCT