Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0272 ATGGAGTTCATCATATTACTTTATGGTGCAACAATGCTGTACTTGTGTTTCCTGATCTGGAAACTGTTTGATCAGAGAAGAGACCAAGAGTGTTACATATTGGACTACCAACTGTACAAGCCAAGCGATGAAAGAAAGCTTGGAACCGAATGCTGTGGCAGGATCATAGAGAGGAACAAGCATTTGGGTCTGAATGAGTACAAATTCCTCCTCAAAGCCGTTGTCAACTCCGGCATTGGTGAGGAAACGTATGCCCCAAGTAACGTTATCGAGGGTCGTGAGGCAGCTCCAACACTGAAAGATGGTGTCACGGAAATGGAGGAGTTTTTTCATGACAGCATTGCCAAGCTCCTTGCAAGTTCAGGCATTTCCCCCTCGCAGATCGATGTGCTTGTGGTGAATGTCTCTATGTTCTCCGTTGTTCCTTCCCTGACTTCAAGAATCATCAACCGCTACAAAATGAGGGAGGACGTAAAGGCTTACAACCTCACTGGGATGGGTTGCAGTGCCAGTCTTATTTCACTGGACATCATTAAAAACATTTTCAAGTCGCATAAGAACAAGTTTGCTGTTTTGGTGACTTCCGAGTCTCTCAGTCCAAACTGGTATAACGGCAACGACAGATCAATGATTCTTGCCAACGGTTTGTTCCGGAGTGGTGGGTGTGTGATACTTTTGACAAACAAAAGATCCTTCAAGCACAGGGCCATGATGAGGCTGAAGTGTTTGGTGAGGACTCACCATGGGGCTAGAGAAGATGCTTACAGTTGCTGCAATCAGAAGGAAGATGAAGAAGGCAGGCTTGGGTTTTACCTTGGAAAAAACCTTCCCAAGGCAGCTACAAGAGCCTTTGTTGATAACCTAAGGGTGTTGTCACCCAAGGTTTTGCCAACTAGAGAGTTGCTAAGGTTTATGGTTGTGTTCCTCTTGAGAAAACTGAGGGATAGTAGTTCCCTTAAGTCTTCAAGTGGGGGATCTAGTAAGTCTAATAACAAATCTCCTTTGAACTTCAAAACTGGGATTGAACATTTTTGCCTGCACACAGGAGGAAAAGCTGTGATTGATGGGATTGGAATGAGCTTAGATCTGTGTGAATATGACCTTGAACCAGCAAGAATGACACTCCATAGGTTCGGCAACACTTCTGCTAGTAGCCTGTGGTACGTGCTGGGGTACATGGAGGCCAAAAAGAGACTCATGAAGGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAGGTAATGAAGGATCTGAGGGATCATCCTAACGTGTGGGACGAATGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAATTTGGTTGGATCAATGATGTTCAAGAAGCAAGCAACTTCAAACTCCATGATTTTATCAAGTAA 1422 0.4473 MEFIILLYGATMLYLCFLIWKLFDQRRDQECYILDYQLYKPSDERKLGTECCGRIIERNKHLGLNEYKFLLKAVVNSGIGEETYAPSNVIEGREAAPTLKDGVTEMEEFFHDSIAKLLASSGISPSQIDVLVVNVSMFSVVPSLTSRIINRYKMREDVKAYNLTGMGCSASLISLDIIKNIFKSHKNKFAVLVTSESLSPNWYNGNDRSMILANGLFRSGGCVILLTNKRSFKHRAMMRLKCLVRTHHGAREDAYSCCNQKEDEEGRLGFYLGKNLPKAATRAFVDNLRVLSPKVLPTRELLRFMVVFLLRKLRDSSSLKSSSGGSSKSNNKSPLNFKTGIEHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLMKGDRVLMISFGAGFKCNSCLWEVMKDLRDHPNVWDECIDDYPPESLANPFMEKFGWINDVQEASNFKLHDFIK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0272 473 Gene3D - 58 423 IPR016039 GO:0016746
Vra4g0272 473 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 341 422 IPR013747 -
Vra4g0272 473 SUPERFAMILY Thiolase-like 17 232 IPR016039 GO:0016746
Vra4g0272 473 SUPERFAMILY Thiolase-like 243 424 IPR016039 GO:0016746
Vra4g0272 473 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 456 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra4g0272 473 Pfam FAE1/Type III polyketide synthase-like protein 25 313 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra4g0272 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 463 - -
Vra4g0272 473 CDD CHS_like 12 421 - -
Vra4g0272 473 PANTHER 3-KETOACYL-COA SYNTHASE 1 463 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0272 Vra-Chr4 5354469 5356294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0272 19 470 Acyl Lipid Metabolism Gene Families AT2G28630 68.192 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0272 K15397 - gmx:100776947 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0272 4 5354469 5356294 Vra4g0272 4 5354469 5356294 ECH
Vra4g0272 4 5354469 5356294 Vra2g0645 2 5184436 5186456 ECH
Vra4g0272 4 5354469 5356294 Vra2g0645 2 5184436 5186456 PCT