Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0645 ATGGAGTTGCTCTATCTACTGTACCTCGTCCCAACGTTGTACTCATGTTTACTCATCTGGAAAATGTTGGAGGAGAGACGCGACAGGGAGTGTTACATCTTGAACTACCAATGCTACAAGCCCCCCAACGACCGCATGCTGGGCACCGAGTTCTGTGGGAAACTCATCAAACGCTCCGAAAACTTGGGTCCCAACGAGTACCGTTTTCTGTTGAAGGCCATCGTCAGCTCCGGCATCGGCGAACAGACTTACGCGCCAAGAAACATCTTCGAGGGTAGAGAGGCAACGCCCACATTGCACGACAGCATCCAAGAGATGGAAGAGTTCTTCAACGACGCCATCGCTAAGCTTCTCGCCAAATCCAAAGTCTCCCCCTCCGAGATCGACGTCCTCGTCGTCAACATCTCCATGCTCGCCGCTCTCCCCTCTCTCTCCGCGCGCATCATCAACCGCTACAAGCTCCGCCACGACGTCAAGGTCTACAACCTCACCGGCATGGGTTGCAGCGCCAGCCTGATCTCCATGGACATTGTGAAAAACATCTTCAAGACGCAGAGGAACAAGCTGGCCTTGTTGATCACCTCGGAGTCCCTCAGTCCCAACTGGTACACCGGAAACGACAGATCCATGATCCTCGCCAACTGCCTGTTCCGCTCCGGCGGCTGCGCGATTCTCTTGACCAACAAACGGTCCTTGAAGGACAGAGCCATGCTGCGGTTGAAGTGCCTGGTGAGGACGCACCACGGTGCCAGAGAAGAGGCTTATGGTTGTTGTGTTCAGCGGGAAGATGAGCAGGGAAGGCTAGGGTTTCACCTTGGGAAGACGCTTCCGAAGGCTGCCACGCGAGCCTTCGTTGATAATCTTCGAGTGATAGCACCCAAGATATTACCCGTCCGTGAGTTGCTCAGGTTTCTGTTCATGTCGCTTATAAAAAAACTGAACAAGAACAACACTCCCAAGTCTGCGGTCACCGGAGCTACAAAATCTCCGTTGAACTTCAGAACAGGGGTGGATCACTTTTGCTTGCATACGGGAGGAAAAGCGGTGATCGACGGCATTGGAATGAGCTTGGATCTGAGCGAGTACGACCTGGAACCGGCGAGGATGACGCTGCACCGGTTCGGGAACACGTCGGCGAGTAGCTTGTGGTACGTGTTATCGTATATGGAAGCGAAGAAGAGGTTGAAAAAGGGTGACACGGTGTTCATGATAAGCTTTGGAGCAGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGATGAAGGACCTGGGAGACCCAAATGTGTGGGACGATTGCATTGATGACTACCCACCAGAGACACTGGACAACCCCTTCATGAAGACCTATGGTTGGATCAACGAGGTTGAAGACCCCTACACTTACGAAAATATCCCTGATTTTCTCAAGTGA 1410 0.5262 MELLYLLYLVPTLYSCLLIWKMLEERRDRECYILNYQCYKPPNDRMLGTEFCGKLIKRSENLGPNEYRFLLKAIVSSGIGEQTYAPRNIFEGREATPTLHDSIQEMEEFFNDAIAKLLAKSKVSPSEIDVLVVNISMLAALPSLSARIINRYKLRHDVKVYNLTGMGCSASLISMDIVKNIFKTQRNKLALLITSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKDRAMLRLKCLVRTHHGAREEAYGCCVQREDEQGRLGFHLGKTLPKAATRAFVDNLRVIAPKILPVRELLRFLFMSLIKKLNKNNTPKSAVTGATKSPLNFRTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGDPNVWDDCIDDYPPETLDNPFMKTYGWINEVEDPYTYENIPDFLK* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0645 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Vra2g0645 469 CDD CHS_like 17 417 - -
Vra2g0645 469 Gene3D - 71 419 IPR016039 GO:0016746
Vra2g0645 469 SUPERFAMILY Thiolase-like 243 419 IPR016039 GO:0016746
Vra2g0645 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra2g0645 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 - -
Vra2g0645 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra2g0645 469 PANTHER 3-KETOACYL-COA SYNTHASE 1 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra2g0645 469 SUPERFAMILY Thiolase-like 19 231 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0645 Vra-Chr2 5184436 5186456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0645 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 68.490 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0645 K15397 - gmx:100810048 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0645 2 5184436 5186456 Vra2g0645 2 5184436 5186456 ECH
Vra4g0272 4 5354469 5356294 Vra2g0645 2 5184436 5186456 ECH
Vra4g0272 4 5354469 5356294 Vra2g0645 2 5184436 5186456 PCT