Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0268 ATGAAGTGTGAAGTGTCACTAAAATGCTTCCGTTTCTGTTACACTTACTTCTATATATATTCGCTGTGTTTTCACGCATATCACATACAAATTCCAAAATCTTTTTCTTTTCGATCTGTAATCTTCTGGTCCACTGAAAAAGCGAACAAGAAGAAGATGGAGATTGGTCTTTCTCCCAAGTTGGCGAAGAAAGTTTCCGAAGGGGATGGTGGGTCCTACCTCGCCTGGTCCCCTTCTGAACTTCCCATGCTTCGCGAAGGTAACATTGGTGCCGCCAAACTCTTTCTGCACAAAAATGGTTTCGCCCTTCCTCGATATTCTGACTCTTCCAAAGTCGCCTATGTTCTTCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAGGAGAAGGTTGTTGCAATCAAGAAGGGGGATGCGCTTGCACTCCCCTTTGGTGTTGTAACATGGTGGTATAACAAAGAAGAAACTGAGTTGATTGTTCTGTTTCTTGGGGACACTTCCAAGGCTCACAAGGCTGGTGAATTCACTGACTTTTTACTGACTGGTTCCAATGGAATCTTCACGGGATTTTCCACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCGGGCAAAGGGGTTGTGCAGTTGGAAGGAAGCATCACACTACCCGAGCCTAAACCAGAGCACCGGATTGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGACTAGGGGCTGACCTTGTGAGGTTGGATGGAGGAGCCATGTGCTCTCCAGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTCAGGGGTAGTGGCCGGGTTCAGGTTGTTGGAGTTGATGGTCAAAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAAATTGCTGATCCAGAGGGAATGGAGTGGTTCTCTATAATCACCACCCCTAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCACCTTCTGTTCTGCAAGCTGCTTTCAATGTAGATTCAGGAGTGGAGCAACTGTTCCGTTCAAAGAGGACTTCCGATGCTATTTTCTTCCCTCCACCAAATTAG 1227 0.4605 MKCEVSLKCFRFCYTYFYIYSLCFHAYHIQIPKSFSFRSVIFWSTEKANKKKMEIGLSPKLAKKVSEGDGGSYLAWSPSELPMLREGNIGAAKLFLHKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETELIVLFLGDTSKAHKAGEFTDFLLTGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGKGVVQLEGSITLPEPKPEHRIGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGQRVLETTIKAGNLFIVPRFFVVSKIADPEGMEWFSIITTPNPIFTHLAGSSSVWKALSPSVLQAAFNVDSGVEQLFRSKRTSDAIFFPPPN* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0268 408 SUPERFAMILY RmlC-like cupins 64 397 IPR011051 -
Vra4g0268 408 Gene3D Jelly Rolls 247 408 IPR014710 -
Vra4g0268 408 PRINTS 11-S seed storage protein family signature 263 283 IPR006044 GO:0045735
Vra4g0268 408 PRINTS 11-S seed storage protein family signature 310 326 IPR006044 GO:0045735
Vra4g0268 408 PRINTS 11-S seed storage protein family signature 328 343 IPR006044 GO:0045735
Vra4g0268 408 PRINTS 11-S seed storage protein family signature 346 364 IPR006044 GO:0045735
Vra4g0268 408 PRINTS 11-S seed storage protein family signature 368 385 IPR006044 GO:0045735
Vra4g0268 408 CDD cupin_11S_legumin_C 250 405 - -
Vra4g0268 408 PANTHER - 55 398 - -
Vra4g0268 408 SMART Cupin_1_3 55 209 IPR006045 -
Vra4g0268 408 SMART Cupin_1_3 247 391 IPR006045 -
Vra4g0268 408 CDD cupin_11S_legumin_N 57 225 - -
Vra4g0268 408 Pfam Cupin 62 208 IPR006045 -
Vra4g0268 408 Pfam Cupin 251 387 IPR006045 -
Vra4g0268 408 Gene3D Jelly Rolls 45 246 IPR014710 -
Vra4g0268 408 PANTHER OS03G0336100 PROTEIN-RELATED 55 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0268 Vra-Chr4 5316927 5319635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0268 87 399 Miscellaneous Gene Families AT2G18540 21.703 7.94e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0268 - - vra:106758740 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0268 4 5316927 5319635 Vra4g0268 4 5316927 5319635 ECH
Vra4g0268 4 5316927 5319635 Vra2g0637 2 5022788 5027258 PCT