Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0637 ATGGCATCAGCATCACGCAGGGGAAGAAATACTGGGGCTTATTTCCACCAGTTCTGTGCTGAGGCCGGAGCAACAGGAGCAGTAGATGCAGTAGGGGCAGCATCTAGGAGGCGTCGTAAGAGAGCTGCAGCTCAGCAGGTGCAGGTGCCTGATGAGGTACCAGTCCAGCACGCGGAGCCCTTCCCGATGAGGGACATGTACATCCCAATGATGGAAGCGAGGATGGAGGCCCTTCATAGAGGGCAGTTTCACCATGTCTATGGNGGAATTGTTCTCCCTGAATCACAAGAGAAGGTTGTTGCAATAAAAAAGGGTGATGCTTTGGCACTCCCTTTTGGTGTAGTGACATGGTGGTATAACAANGAGGATACCGAGTTGGTNGTTCTGTTCCTGGGTGAAACATCAAAAGCCCACAAGACTGGTGAATTCACTGATTTTTTTCTGACTGGTGCCAATGGAATCTTCACTGGATTTTCAACTGAGTTTGTGGGGAGGGCTTGGGACTTGGAAGAAAAGGATGTGAANGCCCTTGTTGGGAATCAATCAGGTAAGGGTATTGTGAAGGTTGAAGGAAATATCNAGCTTCCTGAGCCTCAAGAGGANCATAGGAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTGGGAGCAGACCTTGTGAGGTTGGATGGAAACGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCATATCAGGTTACATACATTGTGAGGGGAAGTGGCCGTGCTCAGGTTGTTGGTGTGGATGGTCGTAGGGTTTTGGAAACAACTGTGAAAGCTGGAAATTTGTTCATTGTCCCAAGGTTTTTTGTTGTGTCCAAGATTGCTGACTCTGATGGCCTCGAGTGGTTCTCTATCATCACTACCCCCAATCCTGTATTTACTCACCTGGCTGGAAGTATTGGGGCATGGAAGGCTCTTTCACCATCAGTTCTGCAGGCAGCTTTCAATGTCGATGAAGAACTTGAGAAACACTTTCGTTCAAAGAGGAATGCAGATGCCATTTTCTTCCCTCCTCCAAATTGA 1125 0.4809 MASASRRGRNTGAYFHQFCAEAGATGAVDAVGAASRRRRKRAAAQQVQVPDEVPVQHAEPFPMRDMYIPMMEARMEALHRGQFHHVYGGIVLPESQEKVVAIKKGDALALPFGVVTWWYNXEDTELVVLFLGETSKAHKTGEFTDFFLTGANGIFTGFSTEFVGRAWDLEEKDVXALVGNQSGKGIVKVEGNIXLPEPQEXHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAYQVTYIVRGSGRAQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPNPVFTHLAGSIGAWKALSPSVLQAAFNVDEELEKHFRSKRNADAIFFPPPN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0637 374 Gene3D Jelly Rolls 213 374 IPR014710 -
Vra2g0637 374 PRINTS 11-S seed storage protein family signature 229 249 IPR006044 GO:0045735
Vra2g0637 374 PRINTS 11-S seed storage protein family signature 276 292 IPR006044 GO:0045735
Vra2g0637 374 PRINTS 11-S seed storage protein family signature 294 309 IPR006044 GO:0045735
Vra2g0637 374 PRINTS 11-S seed storage protein family signature 312 330 IPR006044 GO:0045735
Vra2g0637 374 PRINTS 11-S seed storage protein family signature 334 351 IPR006044 GO:0045735
Vra2g0637 374 CDD cupin_11S_legumin_C 216 371 - -
Vra2g0637 374 Pfam Cupin 89 173 IPR006045 -
Vra2g0637 374 Pfam Cupin 217 355 IPR006045 -
Vra2g0637 374 Gene3D Jelly Rolls 65 212 IPR014710 -
Vra2g0637 374 SMART Cupin_1_3 53 175 IPR006045 -
Vra2g0637 374 SMART Cupin_1_3 213 357 IPR006045 -
Vra2g0637 374 PANTHER OS03G0336100 PROTEIN-RELATED 88 364 - -
Vra2g0637 374 PANTHER - 88 364 - -
Vra2g0637 374 SUPERFAMILY RmlC-like cupins 88 364 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0637 Vra-Chr2 5022788 5027258 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0637 - - gmx:100782055 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0637 2 5022788 5027258 Vra2g0637 2 5022788 5027258 ECH
Vra4g0268 4 5316927 5319635 Vra2g0637 2 5022788 5027258 PCT