Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0209 ATGCCTGAACGTACGTACAAACATATTGATGTTGCAAGAAGTCCTACCAGCATCGCTAGTGTGGAACATTTCCTCCGAAGTGCAGCCGGGGATTCTTCTAGAATGTCACCAACTAGCTCTTCCCCTTCCTCTCCTATGAAGCAACAGGACCTGGAAGATGACCAAGGCCTCTATCAGAAGAAATCAGTCCTCACCAAAGTGAAGCAAAAGGCCAGGAAATTGTGCTACAGCCTCAGCAAGAAAAGAATAGAGGACGACAATGTCACACCCTCTAGTAGAGCTAGGTTTGCAGATGAAGGGGAGGAGGAGGAAGAAATTGAAGAAGAAGAACAAGAAGAAAAAGACGCTGAATACCTTGGAGCTCCTATGTATGAATCGGAGCAGGCACCTGAGACATACAAAGAAAATGCAAGGCAACATCCAAGAGCAAATCCAGTAATCTCTGAGAAGCACGTTTTGCATAACGCTGTCAAACTAGGAATGCAGGAAGATCAAAAGCCAAATGCTGCTGTCAATCACAAACTCACTTCAACAACTCAACCTGATACTGCAACAACAGTGGCAGCATCTTCACCCAACGCCTCTGAAACCTTAGCTCAGAAAATGACACCTGCCTATGCTGCAGGGTCGCCTGCAGCCAATAGCATCCCGTCCCAAAATTCATCTGTTTCATCATCTCGGCTGCAACATTCATTTTCCTCGTCTGCTTCACAGAGTAGGAAGAATACAAGCCAAAATGTTCCTTCAGTCAATGATTATTTGAAGAACAAGTCTGAAAAAGAGGATGATGCCAAAATTGAGTCTCCAAAGCAAGATTTGTCATCTTCGTCTGCTTCAAAGAGTGGGAAGATTCCTCAAAAGACTTATTCACTCAAAGATTATGCAATGAACAGGTCTGAACAAAGGAATGATGCCACAAGCATGATTCCATTGCAAAAATCATCATCCTTCTCAGTTGCTTCATTGAGAGGGAAAAACACAGGCCAAAAGAGTGCTTCGGCCAAAGATTATTCAATGAGCAAGTCAGAGCCAAGGGACGATGAAAAAACTGAATCTCAGCCTCAGGTGACACATGGAGAAAATGGTCCAAGTAATTCAGGCATGATGGACAAGGTGAGAGGAGCTGTAAATTCATTTCTCGGGAATGAGGAGCCATCAGAAGAATATGGAGTCAAAATTCCTACTACACGCACTTCATCACAAACTCAAGGTAAAACAATCATTACAAATGCACCGTTCTGCCATATATCCTATATATCATATGATACTATCATCTTTTTTTTCATGCAAAGCTCTTTTTTCACTACATAA 1311 0.4272 MPERTYKHIDVARSPTSIASVEHFLRSAAGDSSRMSPTSSSPSSPMKQQDLEDDQGLYQKKSVLTKVKQKARKLCYSLSKKRIEDDNVTPSSRARFADEGEEEEEIEEEEQEEKDAEYLGAPMYESEQAPETYKENARQHPRANPVISEKHVLHNAVKLGMQEDQKPNAAVNHKLTSTTQPDTATTVAASSPNASETLAQKMTPAYAAGSPAANSIPSQNSSVSSSRLQHSFSSSASQSRKNTSQNVPSVNDYLKNKSEKEDDAKIESPKQDLSSSSASKSGKIPQKTYSLKDYAMNRSEQRNDATSMIPLQKSSSFSVASLRGKNTGQKSASAKDYSMSKSEPRDDEKTESQPQVTHGENGPSNSGMMDKVRGAVNSFLGNEEPSEEYGVKIPTTRTSSQTQGKTIITNAPFCHISYISYDTIIFFFMQSSFFTT* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0209 436 Coils Coil 97 119 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 270 338 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 79 99 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 339 354 - -
Vra4g0209 436 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 20 404 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 26 57 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 79 371 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 100 115 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 31 50 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 212 253 - -
Vra4g0209 436 MobiDBLite consensus disorder prediction 254 269 - -
Vra4g0209 436 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 20 404 IPR037491 GO:0009737
Vra4g0209 436 MobiDBLite consensus disorder prediction 169 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0209 Vra-Chr4 4835854 4838359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0209 - - vra:106758277 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0209 4 4835854 4838359 Vra2g0578 2 4580668 4584510 PCT