Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0578 ATGGCTCAACTCGAACGCCCCCAGAGACAGCTTGAAACTACTGCAAAAGCTCCCCCTGCCATCCACACCATGGAACAACTCCTCCGAGAAATGGCTCAACTCGAACGCCCCCAGAGACAGCTTGAAACTACTGCAAAAGCTCCCCCTGCCATCCACACTATGGAACAACTCCTCCAAGGTGAGTCCTCAAAGTCTAGTAAGAATTCACCAACCTGCTCCTCTTCCCCTTCCTCCAACTTGTCTTCCCCCAGCTCCCCTTTCTTCCAAAGGTTGAGATCTTCTCATGACTCAGAAGACGATCATTCCCAGAATCCCAAAAAATCAATTCTCACCAAAGTCAAGGAGAAGGCCAAGAAACTTCGCCACAGCCTCAGCAAGAAAAAACATGAAGATGGGAACCTCAGTAGTCCATCATCTGCTACTGCCGCAGAAGGTGATGGAGCAGAAGAAGATGCTGAATTTCTCGGAGCTCCTATGTACGAATCAGAGAAGACATCTACTGGGTACAAACCAAATGCAAAGCAGATTCCTAGTCCAAGAGCAAATCCTATGATCCCTGAGAAGCATGTTGTATCAAGCAGTGACAAACACGTAGTCGAACAAGATCATGAAAGGTCACTGTACCGATCCTTATCCAAGAGAACAACACACCCCGCAACAATAATAACAGCCACCACCCCAAATGCTACCACTGCTTCTGTTACTAATGTTAACGTTAATACTCATCCTAGTACTCCTTCTCCTCTAAACAAGACAACCACTGAAACGACAACACCTAAACTGTCAACAGTTCGGACTGAAAAACCAGATGTTGCACATGCAACCTCCAAAGTTCAAGGTCTCACTGTGTCCAAACCCTCAGAGCTTCATGATCATCCTTCACCATCATCACCATCATCATCATCACCAGCAGCATTTGCACCAAAAACAAGTCGCAGCAATTTGTCCTATTCTGCTCCTCGTACTCCCCTTGCAAGAGTAGCAACTTCTCAGTTTCCTACAACCACTCCGCGAACTACATCAGCTCCAATAACTTTAGCACCATCAGCTGCTACTTCACTGAGTGGGAAGAACACAAGCCCCACCGCGCAAATATGGGATAAGGGTGTGTCCATGAAAGAGTACTTCTTGAACAAACTGGAGCCGGGGGAAGATGAGAAGGCGTTGTCTCAGGTGATATCTGAAGCAATGAGTCCTCGCAAAACTCCTGGTGATGCAGGCGTGATGGAGAAGGTGAGAGAAGTTGTCACTTCTTTGCTCCGAACTGAGGAACCTGCAAAATACGCAGACGCAACTAATGTTGCTACTCCAAGTACTACTCGCTTGTCACCTCAGAGCAGTACTCGCTTGTCACCTCAGAGCCCACTATCTATCAACGCTTCCCGCGCTCCATCTCAAATTCCATCATACTCCAATGCTTCTCGTGCTTCGTCTCAAATGCCAGCATCTACTAGTGTTTCTCGCACTTCATCACAAGTCCCTATATCTTACAACGCTCAGCAAGACTATACAGAGGCCCAAGAAGAAAACCATGGCCGAATTCTTCAGGCAAATTGA 1557 0.4721 MAQLERPQRQLETTAKAPPAIHTMEQLLREMAQLERPQRQLETTAKAPPAIHTMEQLLQGESSKSSKNSPTCSSSPSSNLSSPSSPFFQRLRSSHDSEDDHSQNPKKSILTKVKEKAKKLRHSLSKKKHEDGNLSSPSSATAAEGDGAEEDAEFLGAPMYESEKTSTGYKPNAKQIPSPRANPMIPEKHVVSSSDKHVVEQDHERSLYRSLSKRTTHPATIITATTPNATTASVTNVNVNTHPSTPSPLNKTTTETTTPKLSTVRTEKPDVAHATSKVQGLTVSKPSELHDHPSPSSPSSSSPAAFAPKTSRSNLSYSAPRTPLARVATSQFPTTTPRTTSAPITLAPSAATSLSGKNTSPTAQIWDKGVSMKEYFLNKLEPGEDEKALSQVISEAMSPRKTPGDAGVMEKVREVVTSLLRTEEPAKYADATNVATPSTTRLSPQSSTRLSPQSPLSINASRAPSQIPSYSNASRASSQMPASTSVSRTSSQVPISYNAQQDYTEAQEENHGRILQAN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0578 518 MobiDBLite consensus disorder prediction 277 342 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 1 185 - -
Vra2g0578 518 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 63 518 IPR037491 GO:0009737
Vra2g0578 518 Coils Coil 110 130 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 432 518 - -
Vra2g0578 518 PANTHER LOW-TEMPERATURE-INDUCED PROTEIN 63 518 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 92 111 - -
Vra2g0578 518 Coils Coil 24 44 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 236 342 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 236 264 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 56 91 - -
Vra2g0578 518 MobiDBLite consensus disorder prediction 427 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0578 Vra-Chr2 4580668 4584510 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0578 - - var:108319604 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0209 4 4835854 4838359 Vra2g0578 2 4580668 4584510 PCT