Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0199 ATGGCTGAGAAAGAGACTGTGTATTCATTAGGTGATTGGAGGAGAATACCAATTTGCACTTTCTTTAAGGATGCAAGACTGGTTTTCAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACTGCTGATCCTATTGCTTCGTTGGTTGACACAGCATTTATTGGCCAAATAGGGCCAGTAGAGCTTGCTGCTGTAGGAGTTTCAATAGCACTCTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACCACTTCTTTTGTGGCTGAGGAAGATACCCTTAGTGGAGCAAGTCCTCAGATAGAGGAGGGTAAATGCTTGGAAGCTGGTGGACCTGTGGATACTGAAACCAAAGAGTTATTACCACAGAAAGTTACAGGTAGAAATGTTCACAATTCAGATTCTGTTGGTGAATCTTTGAATATAGTTAAGGAGGATCACAAGAGAAGGCATATCCCTTCAGCTTCATCGGCATTATTTATCGGTGGTGTCCTTGGCCTCATCCAAGCAATATTTCTTATATCTACGGCAAAACCTTTATTGAACTTCATGCGAGTAACTTTTGACTCTCCTATGCTACACCCTGCACAACAGTATCTGAGATTGAGGTCCCTCGGTGCTCCTGCCGTTCTTCTCTCCTTGGCAATGCAAGGAGTGTTTCGAGGATTTAAAGACACGAAAACACCTTTATATGCCACTGTGGCAGGAGATGCAACTAACATAGCATTGGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGCACCTAATTTCAGCTATACTCCTATGGAGGTTGTTGCAACAAGTTGACCTTATACCTCCGAGCATAAAACATCTACAATTAGACCGTTTTCTTAAAAATGGTTTTCTATTACTAATGAGAGTAGTCGCTGTAACATTTTGTGTGACATTGGCTGCATCATTAGCTGCACGGCAAGGATCAACGTCCATGGCTGCATTTCAGGTCTGTCTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCAGTTGCAGGGCAGGCTATTCTTGCTGGTGCATTTGCTAATAAGGACTTCAACAGGGCATCGGCAACTGCATCCCGAGTTGTGCAGATGGGTTTAGTTCTAGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGTGCTAAAATATTTACAAAAGATGCTGATGTTCTCCACCTCATTCAAATTGGAATCCCGTTTGTGGCTGTCACTCAACCTTTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGAGCTTCTGATTTTGCATATTCAGCCTTCTCCATGGTTGTGGTGGCAATTCTAAGCATTATTTGTCTGCTTATTTTGTCATCCGCGGGTGGTTTCATTGGTATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCGTGGGAGTTCCTAAGGAGCTCATAA 1551 0.4333 MAEKETVYSLGDWRRIPICTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGASPQIEEGKCLEAGGPVDTETKELLPQKVTGRNVHNSDSVGESLNIVKEDHKRRHIPSASSALFIGGVLGLIQAIFLISTAKPLLNFMRVTFDSPMLHPAQQYLRLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDATNIALDPLFMFVFRLGVSGAAIAHVISQHLISAILLWRLLQQVDLIPPSIKHLQLDRFLKNGFLLLMRVVAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFNRASATASRVVQMGLVLGLALAFILGTGLHFGAKIFTKDADVLHLIQIGIPFVAVTQPLNSLAFVFDGVNFGASDFAYSAFSMVVVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFLRIGTGSGPWEFLRSS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0199 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 11 514 IPR044644 -
Vra4g0199 516 TIGRFAM matE: MATE efflux family protein 44 485 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra4g0199 516 Pfam MatE 318 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra4g0199 516 Pfam MatE 166 258 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra4g0199 516 CDD MATE_DinF_like 34 505 IPR044644 -
Vra4g0199 516 PANTHER PROTEIN DETOXIFICATION 43 11 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0199 Vra-Chr4 4769796 4774650 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0199 K03327 - gmx:100170750 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0199 4 4769796 4774650 Vra4g0199 4 4769796 4774650 ECH
Vra4g0199 4 4769796 4774650 Vra2g0550 2 4346314 4350498 ECH
Vra4g0199 4 4769796 4774650 Vra2g0550 2 4346314 4350498 PCT