Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0550 ATGGCTGACAAAGATGGCGTTTATGCAGCAGAAACTGAGAGGAGAGCTCCAATTTTCAGCTTCTTTAAAGATGCTAGATTAGTTTTCAAATTTGACAATCTTGGTTGTGAAATATTATCAATTGCATTGCCTTCAGCAATGGCTTTTATAGCTGATCCTATTGCTTCACTGGTTGACACAGCATTTATTGGTCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGGGTGGCCATAGCACTCTTCAATCAAATATCAAGAATTGCAATATTCCCACTTGTCAGTGTCACTACCTCTTTTGTGGCAGAGGAAGATTCCCTTTCTGGAGCCAGTCCTCAAGTAGAGAAGAATGAAAGGTCGGAGGCAGGTCCAATTATAGATGCTGAAATAAAAGAACTAGTACCACTTAACAAAGATTTGACTGCTATTGACTGTAATATAGTTGAGTTTGAACATAAGAGAAGGCGTATCCCTTCTGCTTCATCAGCCTTACTAATCGGTGGCATTCTTGGAATCATCCAAACAATGTTCCTCATAGTTGCTGCAAAACCTTTATTGAACTTCATGGGAACAACCTCAGACTCTCCTATGCTAAACCATGCACATAAATACCTGATATTGAGGTCCCTCGGTGCTCCTGCAGTTCTTCTCTCGTTAGCAATGCAGGGAATCTTCCGAGGATTTAAAGACACTAAAACGCCTTTATATGCCACATTGGCAGGAGATATAACCAATGTAGCACTTGATCCTTTATTCATATTTGTTTTCCGCTTGGGGGTCAGTGGTGCAGCTATTGCTCATGTTATATCTCAGTACCTAATTTCACTAATACTCCTGTGGAGCTTGATACAGAAAGTTGATCTTATACCACCAAGCATCAAGCATTTACAATTTCATCGATTTCTTAAAAATGGCTTCCTATTATTCGTAAGAGTAATTGCTGTAACATTCTGTGTGACACTGGCAGCATCATTAGCTGCACGCAAGGGACCAACATCCATGGCTGCATTTCAAGTCTGCTTGCAGATTTGGTTAGCAGTGTCCCTTCTTGCTGATGGTCTCGCTGTTGCTGGACAGGCAATTCTTGCAGGTGCATTTGCAAACAAGGACTATGAGAAGGCCGAAGCAACTGCATATCGAGTATTACAGCTGGGGTTGGTTCTGGGATTGGCTCTTGCGTTCATTCTCGGAACAGGACTGCATTTTGGAGCTAAACTATTTACCAAAGATGTTGATGTCATTCACCTCATCAGAATTGGGATCCCGTTTGTAGCAGCCACTCAACCCCTCAACGCTTTGGCCTTTGTATTTGATGGAATCAACTTCGGGGCATCTGATTTTGCATATTCAGCCATTTCTTTGGTTGTGGTTGCAATTTTCAGCATAATTTGTCTACTTCTTTTATCATCTGTTGGTGGTTTCATAGGAATTTGGATTGCTTTGACCATCTATATGGCTCTTAGAGCAATTGTGGGCCTTCTGAGGATTGGAACTGGATCAGGACCCTGGAAGATGATTAGGAGCTAA 1524 0.4193 MADKDGVYAAETERRAPIFSFFKDARLVFKFDNLGCEILSIALPSAMAFIADPIASLVDTAFIGQIGPVELAAVGVAIALFNQISRIAIFPLVSVTTSFVAEEDSLSGASPQVEKNERSEAGPIIDAEIKELVPLNKDLTAIDCNIVEFEHKRRRIPSASSALLIGGILGIIQTMFLIVAAKPLLNFMGTTSDSPMLNHAHKYLILRSLGAPAVLLSLAMQGIFRGFKDTKTPLYATLAGDITNVALDPLFIFVFRLGVSGAAIAHVISQYLISLILLWSLIQKVDLIPPSIKHLQFHRFLKNGFLLFVRVIAVTFCVTLAASLAARKGPTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDYEKAEATAYRVLQLGLVLGLALAFILGTGLHFGAKLFTKDVDVIHLIRIGIPFVAATQPLNALAFVFDGINFGASDFAYSAISLVVVAIFSIICLLLLSSVGGFIGIWIALTIYMALRAIVGLLRIGTGSGPWKMIRS* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0550 507 TIGRFAM matE: MATE efflux family protein 44 477 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0550 507 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 8 506 IPR044644 -
Vra2g0550 507 PANTHER PROTEIN DETOXIFICATION 8 506 - -
Vra2g0550 507 CDD MATE_DinF_like 37 497 IPR044644 -
Vra2g0550 507 Pfam MatE 308 462 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0550 507 Pfam MatE 159 250 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0550 Vra-Chr2 4346314 4350498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0550 K03327 - gmx:100780165 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0550 2 4346314 4350498 Vra2g0550 2 4346314 4350498 ECH
Vra4g0199 4 4769796 4774650 Vra2g0550 2 4346314 4350498 ECH
Vra4g0199 4 4769796 4774650 Vra2g0550 2 4346314 4350498 PCT