Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0172 ATGCATAGGCCAGAAGGGCCAGCAGAGTTTGCTCTCAAGGAGACCTCGCCAAACATAGGAGCAGGTGCAGTCATGAGGGACAAGCTCTCCTGCACCTATGACCTGGTTGAACAAATGCAATACCTTTATGTTCGAGTGGTGAAAGCCAAGGAATTACCAGGGAAGGATGTTACTGGTGGTGTGGATCCTTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCATCACCAAGCACTTTGAGAAAAAGTCCAATCCTCAGTGGAATCATGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTCTGCTGGAGGTGGTAGTGAAAGACAAAGATGTTGCTGTGGATGACTTTGTAGGGAGAGTGATGCTTGATCTGAATGAAATCCCAAAACGTGTGCCACCAGATAGCCCTTTGGCTCCACAGTGGTACAGACTAGAAGACAGGAGAGGTGAGAAAGCCAAGGGAGAGTTGATGTTGGCAGTTTGGATGGGAACTCAAGCAGACGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAGGCTGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCAAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAGGACTTGATACCAACTGACAAAACCCGGTATCCTGAAGTTTTTGTGAAGGCCAACCTGGGAAATCAGTTTTCAAGAACTAGAGCATCTCAGAGTAAAACCATAAATCCCATCTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCTTTGGTTCTGACTGCAGAAGATAGGGTTGGTCCAAACAAGGATGAAATCCTGGGAAGGTGTGTCATTCCTTTACACAATGTGCAAAGGAGGTTTGACCATAAGCCTGTGAACACAAGGTGGTTTAACCTTGAAAAACATGTGGTTGTTGAAGGGGAAAAGAAGAAAGAGACCAAGTTCTCAAGTAGGATACACTTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGCTCGATGAATCAACTAACTACAGTAGTGATCTTAGGCCAACAGCAAAGCAGCTTTGGAAGGCCAGCATTGGAATTCTAGAACTGGGGATTATAAGTGCACAAGGGCTGATGCCAATGAAGACTAGAGATGGTAGAGGAACCACAGATGCATATTGTGTAGCTAAATATGGGCAGAAGTGGATCCGTACTAGGACAATTGTGGATAGTCTTGCTCCAAGGTGGAATGAGCAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAGTAGGGGTCCATGATAATGGTCATTTACATGTTGGAGAGAAATCAGGTTCATCAAAGGATTCAAGAATAGGGAAGGTGAGAATTAGGCTGTCCACTCTTGAAGCTGACAGGGTTTACACACACTCTTATCCTCTTTTAGTACTGCATAATTCTGGTGTGAAGAAAATGGGAGAGGTGCAGTTGGCTGTAAGGTTCACAAGCTTATCTATAATAAACATGTTGTCTATGTATACACAGCCATTGTTGCCAAAGATGCACTACATCCATCCTCTGTCTGTGGTTCAACTAGACAGTCTTAGGCATCAGGCTATCCAGATTGTGTCAATGAGGTTGAGCAGGGCAGAGCCACCACTGAGGAAGGAGGTGGTGGAATACATGCTAGATGTGGATTCACACATGTGGAGTATGAGAAGGAGCAAAGCCAATTTCTTCAGAATAACCATAGTTCTAGGTGGGTTGATAGCCTTTGGAAGGTGGTTTGATCAGATATGCAATTGGAAGAACCCCCTCACAACCATACTCATTCATATCCTTTTCATAATACTGGTTCTGTATCCAGAACTAATACTTCCAACAACTTTCCTCTACCTTTCTCTGATTGGAATTTGGAACTTCAGATGGAGGCCAAGACATCCTCCTCATATGGACACTAGACTATCTCATGCTGATGCAGCCCACCCTGATGAACTGGATGAAGAGTTTGATACATTCCCTACTTCTCGATCATCAGATATGATCAGAATGAGGTATGATCGTTTGAGAAGCATTGCTGGGAAGGTTCAAACTGTTGTAGGAGACTTGGCAACTCAAGGAGAAAGGTTCCATAATCTACTAAGCTGGAGAGACACAAGGGCCACCACTCTCTTTGTGACATTCTGTTTCATTGCTGCACTGGTTCTCTATGTTACTCCTTTCCAAGTTGTCTTCCTTCTCATTGGTTTCTATGTTCTAAGGCACCCCAGATTCCGCCAGAAACATCCTTCAGCCCCATTCAACTACTTCAAGAGATTGCCTGCTAGAGTGGACACCATATTCTAA 2325 0.443 MHRPEGPAEFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKELPGKDVTGGVDPYVEVKLGNYKGITKHFEKKSNPQWNHVFAFSKERIQASLLEVVVKDKDVAVDDFVGRVMLDLNEIPKRVPPDSPLAPQWYRLEDRRGEKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLIPTDKTRYPEVFVKANLGNQFSRTRASQSKTINPIWNEDLMFVAAEPFEEPLVLTAEDRVGPNKDEILGRCVIPLHNVQRRFDHKPVNTRWFNLEKHVVVEGEKKKETKFSSRIHLRVCLEGGYHVLDESTNYSSDLRPTAKQLWKASIGILELGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVDSLAPRWNEQYIWEVFDPCTVITVGVHDNGHLHVGEKSGSSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSIINMLSMYTQPLLPKMHYIHPLSVVQLDSLRHQAIQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRITIVLGGLIAFGRWFDQICNWKNPLTTILIHILFIILVLYPELILPTTFLYLSLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDMIRMRYDRLRSIAGKVQTVVGDLATQGERFHNLLSWRDTRATTLFVTFCFIAALVLYVTPFQVVFLLIGFYVLRHPRFRQKHPSAPFNYFKRLPARVDTIF* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0172 774 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 6 773 - -
Vra4g0172 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 496 IPR035892 -
Vra4g0172 774 Gene3D C2 domain 187 333 IPR035892 -
Vra4g0172 774 Gene3D C2 domain 25 163 IPR035892 -
Vra4g0172 774 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Vra4g0172 774 CDD C2B_MCTP_PRT_plant 41 165 - -
Vra4g0172 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Vra4g0172 774 Gene3D C2 domain 361 498 IPR035892 -
Vra4g0172 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Vra4g0172 774 CDD C2C_MCTP_PRT_plant 202 352 - -
Vra4g0172 774 SMART C2_3c 202 300 IPR000008 -
Vra4g0172 774 SMART C2_3c 41 137 IPR000008 -
Vra4g0172 774 SMART C2_3c 364 471 IPR000008 -
Vra4g0172 774 Pfam C2 domain 363 474 IPR000008 -
Vra4g0172 774 Pfam C2 domain 201 307 IPR000008 -
Vra4g0172 774 Pfam C2 domain 41 134 IPR000008 -
Vra4g0172 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Vra4g0172 774 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 6 773 - -
Vra4g0172 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Vra4g0172 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 178 IPR035892 -
Vra4g0172 774 CDD C2D_MCTP_PRT_plant 364 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0172 Vra-Chr4 4523923 4526798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0172 1 774 Lipid Metabolism Gene Families AT3G57880 80.387 0.0 1328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0172 - - gmx:100809753 1471.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0172 4 4523923 4526798 Vra4g0172 4 4523923 4526798 ECH
Vra4g0172 4 4523923 4526798 Vra2g0519 2 4047402 4050270 PCT