Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0158 ATGGCTTACACACAAGGTTTCTTGCAGTTCCGTGCCCTAACCACTCCTCTTAGGGTTTCGCCAAAATGGGAAGTGGGGACCACCAAACCAAACCGCATTGTTTGCAAAGCAGACAAAGAGGATGTTCAAGACAGTGATGCCACCAACCTTAGCTTTCTCTCTCGCAGGTTGGCCCTCGGCACTGCCCTCATCGGTGGTGCTGCTGTTGCTGGCACTAAGACCTCACCTGCTCGTGCTGATGATGCACAACTCTCTTTCCAGGAACCTGGTGCAATTACCACATTACCAGAAATAAGTTCTGACGAATATCCTGCATCGGTTGTGGAAGCACTTTCTCTCAAACGAACCAGTTTTCCCAAGGGCTTCGTTTTCGGGACAGCATCCGCGGCTTACCAGTACGAAGGAGCGGCATTTGATTATGGAAGAAAGCCTAGTGTATGGGATAACTTCACCCATAAATATCCAGAGAAGATAAACGATAGAAGCAATGGAGATGTGGCAGTTGACGAATATCATCGCTATAAGGAAGATGTTAAGATAATGACGGATATGAATCTGGATGCATACAGATTCTCTATCTCTTGGTCTAGAATCCTGCCAAATGGAAAGGTGGGTGTAAACGAGGAGGGTGTAAATCAAGAAGGAATCGATTATTATAACAAGCTCATCGATCATTTATTAGCCAACCGTATAGAACCATATGTGACACTTTTTCACTGGGATTTTCCCCAAGCCTTGGAAGAAGAATATGGAGGTTTCTTAAATCCTCGCGTTGTAGATGATTTTCGAAACTACGCAGACATTTGTTTCAAATACTTTGGAAACAGAGTGAAACGTTGGATCACTCTAAACGAGCCATGGGCTTATAGTAGGGAAGGTTATTCAATTGGAAACTTTGCACCAGGTCGATGCTCTGATACGATAGATTCAACTTGTCTCGGCGGTGATTCTGGAACAGAACCTTATATTGTTACACATCATCTACTACTCGCTCATGCAGCTGCTGTGGATTTGTACAGGAATGCGTACAAGGATCAAGACGGAGACATAGGCATAACACTTATATCTCGTTGGTTTGAGCCATATTCAAATACCGAAGCAGATAAAAAAGCTGCCCAACGAGCACAAGACTTCTTCTTTGGATGGTACATGGATCCATTGACATCAGGAAAGTATCCAGAAAGCATGCGTTCCTTAGTTGGAAGAAGATTGCCAGAATTCACTGAAGAACAATCAAGACTTTTAGCTGGTTCATTTGATTTTGTGGGATTAAACTATTACACTACTAATTTTGCTGCTGATCAACCTGCATCCAATCTCAACCCTAGTTATGAGACAGATGCCAATGTCAATTATTTAACTGAACGCAATGGTATTCCAGTTGGTACACCGACGGCTTCTAATTGGTTATTTGTATGCCCCAAAGGATTTAAAGACATGTTGCTCTATGTTAAAGAAAAATACAACAATCCCTTGATTTACATTACTGAAAATGGTAGGGGAAATGATCTGAATGATGAAGGACAAACACTTGAAGAAGCTCTGCTAGATATTTATAGAATCGATTACTATTATCGTCATCTGTACTATCTACGTTCAGCAATGAGTGAGGGAGTAAAGGTAAAAGGATATTTTGCATGGTCACTATTGGACAATTTTGAATGGAGGAATGGTTATTCGGTTGGATTCGGACTAAACTACGTTGACAGAAACCATGGCTTGAAGCGATATCCCAAACTCTCAGCACAATGGTTTAAGAATTTTCTTATAAAGCCACAGCCAAGGCCAAGTCTCGAAGGATAA 1803 0.4193 MAYTQGFLQFRALTTPLRVSPKWEVGTTKPNRIVCKADKEDVQDSDATNLSFLSRRLALGTALIGGAAVAGTKTSPARADDAQLSFQEPGAITTLPEISSDEYPASVVEALSLKRTSFPKGFVFGTASAAYQYEGAAFDYGRKPSVWDNFTHKYPEKINDRSNGDVAVDEYHRYKEDVKIMTDMNLDAYRFSISWSRILPNGKVGVNEEGVNQEGIDYYNKLIDHLLANRIEPYVTLFHWDFPQALEEEYGGFLNPRVVDDFRNYADICFKYFGNRVKRWITLNEPWAYSREGYSIGNFAPGRCSDTIDSTCLGGDSGTEPYIVTHHLLLAHAAAVDLYRNAYKDQDGDIGITLISRWFEPYSNTEADKKAAQRAQDFFFGWYMDPLTSGKYPESMRSLVGRRLPEFTEEQSRLLAGSFDFVGLNYYTTNFAADQPASNLNPSYETDANVNYLTERNGIPVGTPTASNWLFVCPKGFKDMLLYVKEKYNNPLIYITENGRGNDLNDEGQTLEEALLDIYRIDYYYRHLYYLRSAMSEGVKVKGYFAWSLLDNFEWRNGYSVGFGLNYVDRNHGLKRYPKLSAQWFKNFLIKPQPRPSLEG* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0158 600 Pfam Glycosyl hydrolase family 1 116 589 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 Gene3D Glycosidases 99 595 - -
Vra4g0158 600 ProSitePatterns Glycosyl hydrolases family 1 active site. 493 501 IPR018120 -
Vra4g0158 600 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 112 592 - -
Vra4g0158 600 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 122 136 IPR033132 -
Vra4g0158 600 PRINTS Glycosyl hydrolase family 1 signature 418 432 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 PRINTS Glycosyl hydrolase family 1 signature 493 501 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 PRINTS Glycosyl hydrolase family 1 signature 517 528 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 PRINTS Glycosyl hydrolase family 1 signature 538 555 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 PRINTS Glycosyl hydrolase family 1 signature 562 574 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 PANTHER GLYCOSYL HYDROLASE 112 592 IPR001360 GO:0004553|GO:0005975
Vra4g0158 600 SUPERFAMILY (Trans)glycosidases 108 589 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0158 Vra-Chr4 4413452 4418210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0158 113 589 Glycoside Hydrolase AT5G44640 53.445 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0158 - K01188 vra:106778474 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0158 4 4413452 4418210 Vra2g0513 2 3956828 3959932 PCT