Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0513 ATGGCATGCAAGAGCTTTTGCATTCTCAGCATCATTACTTTTGTTCTTGTAATCAGCAAAACAAATGTTAACTGCATAGAAACCGATGCAGTCGATCCTATTATTGACGTTGCTAATCTGAATCGGGATAGTTTCCCACCGGGTTTCATCTTTGGGGCTGGATCCTCTTCATATCAGTTCGAAGGTGGTGCAAGAGAAGGTGGTAGAGGACCAAGTGTGTGGGATACTTTCACCCATAAATATCCAGAAAAGATACTGGACAAAAGCAATGGAGATGTGGCTATAGATACATATCACCGTTATAAGGAAGATGCTAAATTTATGAAGAATATGAACTTGGATTCATACAGATTCTCGATTTCATGGTCCAGGATACTACCAAATGGCAAGTTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAATGTCATCAACGAACTATTGGCTAATGGTATAAAACCACTGGTAACTCTTTTCCATTGGGATCTTCCCCAAACTTTAGAAGATGAATATGGTGGCTTCCTAAGTCCTCTCATAATCAAGGATTTTCGGGATTATGCGGACGTTTGCTTCAAGGCATTCGGAGATAGAGTTAAGCATTGGGTTACACTGAACGAGCCATGGACTTACAGCATTAATGGCTATGCAAATGGAACAATGGCACCAGGACGTTGTTCTAGTTGGGTAAATCCAAATTGCGTTGGAGGGGATTCTGGTACAGAGCCCTATATAGTTTCACACCACCAACTTCTTGCTCATGCAGCAGCTGTTCGTGTATACAAGACCAAGTATCAGGCATCACAGAAGGGTTTGATAGGCATTACCTTGGTATGTAATTGGTTCATACCATTTTCAGATACCAAATCTGATAAAAAAGCTGCTGAAAGATCGGTTGAATTCATGTATGGATGGTTTATGGATCCATTAACAACAGGAGAATATCCGAAAAGTATGCGAGCTCTTGTGAAATCACGGTTACCAAAGTTTACTGCGGAGCAAGCTAGGTTACTGATTGGTTCATTTGACTTCATTGGCATAAACTACTATTCTTCAATATATGCTTCTGATGCACCTCATTTGAGCAATGCTCCACCATACTATGTAACTGATTCTTTAGTCATTTCTGACTTTGAGCGTAATGGGAAGCCCATAGGTATAAAGATTGCTTCTGATTGGCTGTATGTTTGTCCAAGAGGAATTCGTGATCTTGTAATGTATACCAAAGAAAAATATAACAATCCTTTGATTTTCATAACTGAAAATGGTGTAAACGAATTTAATAATGACCAAACATTGTCACTGGAGGAATCTCTGTTGGATACTTACAGAATTGATTACTATTACCGTCATCTTTTCTATCTTCGTTCTGCAATTAGGGAAGGTGCAAATGTAAAGGGATATTATGTTTGGTCTTTATTTGATAATTTTGAATGGTCCATGGGTTATACTGTGCGATTTGGAATGACATATGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCAATATGGTACAAGAATTTTCTCAAGAAAAACAACAGACTTTTTAGTTCCAGTTAG 1578 0.3828 MACKSFCILSIITFVLVISKTNVNCIETDAVDPIIDVANLNRDSFPPGFIFGAGSSSYQFEGGAREGGRGPSVWDTFTHKYPEKILDKSNGDVAIDTYHRYKEDAKFMKNMNLDSYRFSISWSRILPNGKLSGGINQEGIDYYNNVINELLANGIKPLVTLFHWDLPQTLEDEYGGFLSPLIIKDFRDYADVCFKAFGDRVKHWVTLNEPWTYSINGYANGTMAPGRCSSWVNPNCVGGDSGTEPYIVSHHQLLAHAAAVRVYKTKYQASQKGLIGITLVCNWFIPFSDTKSDKKAAERSVEFMYGWFMDPLTTGEYPKSMRALVKSRLPKFTAEQARLLIGSFDFIGINYYSSIYASDAPHLSNAPPYYVTDSLVISDFERNGKPIGIKIASDWLYVCPRGIRDLVMYTKEKYNNPLIFITENGVNEFNNDQTLSLEESLLDTYRIDYYYRHLFYLRSAIREGANVKGYYVWSLFDNFEWSMGYTVRFGMTYVDYKNGLKRYEKLSAIWYKNFLKKNNRLFSSS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0513 525 Gene3D Glycosidases 25 524 - -
Vra2g0513 525 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 PRINTS Glycosyl hydrolase family 1 signature 443 454 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 PRINTS Glycosyl hydrolase family 1 signature 464 481 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 PRINTS Glycosyl hydrolase family 1 signature 488 500 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 SUPERFAMILY (Trans)glycosidases 35 516 IPR017853 -
Vra2g0513 525 Pfam Glycosyl hydrolase family 1 42 519 IPR001360 GO:0004553|GO:0005975
Vra2g0513 525 ProSitePatterns Glycosyl hydrolases family 1 active site. 419 427 IPR018120 -
Vra2g0513 525 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Vra2g0513 525 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 521 - -
Vra2g0513 525 PANTHER GLYCOSYL HYDROLASE 3 521 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0513 Vra-Chr2 3956828 3959932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0513 9 520 Glycoside Hydrolase AT5G44640 53.606 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0513 - K01188 gmx:106794108 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0513 2 3956828 3959932 Vra2g0513 2 3956828 3959932 ECH
Vra4g0158 4 4413452 4418210 Vra2g0513 2 3956828 3959932 PCT