Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1121 ATGGCCTTGTTTGCTGTTGCAGCAGTGCTTCTTTTGTTCTTCACCAGCTCTTCAAGTGCCACTTGGTGCGTTTGCAAGGAGGGAAGTGATACCATACTGCAGAAAACCTTAGACTATGCGTGTGGAGCTGGGGCTGATTGTAACCCTTTGCACCAAAATGGCCCTTGTTTTCAACCAAACACTGTTAGAGCTCACTGTAACTATGCAGTTAACAGCTATTTCCAAAGGAAGGGTCAAGCTCAAGGTTCTTGTGACTTTGCAGGAACTGCCACTGTTACTGCATCAGATCCCAGCAGTGCAGGATGTTCCTACCCTGCTAGCTCCAGTGCAGGAACAGGAACAAGCACACCTTCGTCTCCGTACAGTTCAACAGCAGGAGGAGTAGTGGGAGATGACAGTGATGGTGGCCTTATCAACACTACTTTCTTCATTTCCTTCTTTTCAGGCTTCGTCATCATTCTCTTTTGGTGCTGCTGA 477 0.4759 MALFAVAAVLLLFFTSSSSATWCVCKEGSDTILQKTLDYACGAGADCNPLHQNGPCFQPNTVRAHCNYAVNSYFQRKGQAQGSCDFAGTATVTASDPSSAGCSYPASSSAGTGTSTPSSPYSSTAGGVVGDDSDGGLINTTFFISFFSGFVIILFWCC* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1121 158 Gene3D - 15 115 - -
Vra3g1121 158 PANTHER BETA-1,3 GLUCANASE 1 117 IPR044788 -
Vra3g1121 158 Pfam X8 domain 21 91 IPR012946 -
Vra3g1121 158 SMART X8_cls 21 104 IPR012946 -
Vra3g1121 158 PANTHER PLASMODESMATA CALLOSE-BINDING PROTEIN 3 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1121 Vra-Chr3 11663750 11668326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1121 18 105 Glycoside Hydrolase AT4G34480 47.191 9.12e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1121 - - vra:106757467 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1121 3 11663750 11668326 Vra7g1936 7 38874079 38877502 ECH
Vra3g1121 3 11663750 11668326 Vra3g1121 3 11663750 11668326 ECH