Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1080 ATGGTGGCCGACAGGACCAAGAAGTTGAAGGTTTCCGAAAAGGGAGAGAACCTCGACGAAATCGACGGAGAACTTGTCCTTTCCATTGAGAAGTTGCAGGAGATCCAAGACGAGCTGGAAAAGATCAACGAAGAAGCCAGCGACAAAGTTCTCGAGATAGAGCAGAAGTACAATGAGATTAGGAAGCCCGTTTATGACAAGCGGAATGATATTATCAAGTCAATTCCTGATTTTTGGCTAACTGCTTTTTTGAGTCATCCCGCTCTTGGTGATCTTTTGAACGATGAAGATCAGAAGATATTTAAGCATTTGAGTTCTCTCGAGGTTGAAGATTTTAAAGACGTCAAATCAGGCTACTCAATCACCTTTAATTTCAACGCCAATCCCTATTTTGAAGATACAAAACTTGTAAAGACTTATACCTTCCTTGAGGAAGGAACAACAAAAGTCACTGCCACTCCCATAAAATGGAAGGAGGGCAAGGGCATACCTAATGGAGTTAGTCATGAGAAAAAAGGGAACAAGCGGGCTCCTGTTGATATCAGCTTCTTTAGTTGGTTTAACGACACTGAGCAGAAAGATGAAATTGATGACATCCATGATGAGCAGGTTGCAGAATTAATCAAGGATGATTTATGGCCAAATCCGCTTACTTATTTCAATAATGAAGAACCTGATGAAGATGAGGGTGATGAGGATGAAGCTGATGATGAGGGGAAGGATGATGGTGACTCTGAAGATGATGATGATGAGGGTGAGGAGGATGACGATGAGGGGGAGGAAGATGATGGCAAATGA 798 0.4223 MVADRTKKLKVSEKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIIKSIPDFWLTAFLSHPALGDLLNDEDQKIFKHLSSLEVEDFKDVKSGYSITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVSHEKKGNKRAPVDISFFSWFNDTEQKDEIDDIHDEQVAELIKDDLWPNPLTYFNNEEPDEDEGDEDEADDEGKDDGDSEDDDDEGEEDDDEGEEDDGK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1080 265 Gene3D Nucleosome assembly protein 76 224 - -
Vra3g1080 265 Pfam Nucleosome assembly protein (NAP) 73 222 IPR002164 GO:0005634|GO:0006334
Vra3g1080 265 Pfam Nucleosome assembly protein (NAP) 29 73 IPR002164 GO:0005634|GO:0006334
Vra3g1080 265 PANTHER TESTIS-SPECIFIC Y-ENCODED PROTEIN 2 251 IPR002164 GO:0005634|GO:0006334
Vra3g1080 265 Coils Coil 25 59 - -
Vra3g1080 265 MobiDBLite consensus disorder prediction 214 265 - -
Vra3g1080 265 PANTHER NUCLEOSOME ASSEMBLY PROTEIN (NAP)-RELATED 2 251 - -
Vra3g1080 265 Gene3D - 1 75 - -
Vra3g1080 265 MobiDBLite consensus disorder prediction 222 265 - -
Vra3g1080 265 SUPERFAMILY NAP-like 7 221 IPR037231 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1080 Vra-Chr3 11141729 11145334 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1080 K11290 - gmx:100808081 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1080 3 11141729 11145334 Vra7g1885 7 38375235 38379034 ECH
Vra3g1080 3 11141729 11145334 Vra3g1080 3 11141729 11145334 ECH
Vra3g1080 3 11141729 11145334 Vra7g1885 7 38375235 38379034 PCT