Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1014 ATGGCTCAAATTGCTCTTATTGCTCCACCAACTTTCATAGCCATCACCACCGGTAGAGGAAAACATCACCTGCATGAACTCTCGTATGCAAGAAAGAAACCGAGTTTCCCATTACTTGTTGAGAGTAGGAAGATGGAGAAAAGTCAATTGTTTGTTTCTTCAAATTCCGGTGATGAAAGGAGTAGAAGTGTGGCGGTCAAAGTTTCAGAAGGAGGAGCCATCTCTCTCCCTCATGGCTGGCCACCACAAAAGAAGGGTTCTGAAGATCAAATCGAAGGCATAAACAGAATGAAGAGTTCCAACCGGTTCTTCACTGTAGCGCTGGTGGCGGCGTGGTACTCCTCCAACATTGGGGTGCTTCTCTTGAATAAGTATTTGCTCAGCAACTATGGGTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCGTGTTCCTTGCTCAGTTACGTGGCTATCGCGTGGATGAAGCTAGTGCCGTTGCAAACCATTCGATCCAGGGTTCAGTTCTTCAAGATCTCTGCTCTCAGTCTAGTTTTCTGTGTCTCCGTTGTGTTTGGGAACATTTCTCTGCGCTACCTCCCCGTATCGTTTAACCAGGCTATTGGCGCCACCACGCCCTTCTTCACTGCCGTTTTTGCTTACCTTATGACCTTCAAGAGGGAGGCTTGGCTCACTTACCTCGCCCTTGTTCCTGTTGTTACTGGAGTCATCATTGCCAGTGGGGGGGAACCTAGTTTCCATCTCTTTGGGTTTATTATATGTGTTGCGGCTACGGGTGCAAGGGCTCTGAAATCAGTGCTGCAAGGGATTTTGCTTTCTTCTGAAGGAGAGAAGCTGAATTCTATGAACCTTTTGCTTTACATGGCTCCAATGGCTGTGGTTTTCCTTCTTCCTGCAACGCTTATAATGGAAGAGAATGTGGTTGGCATCACGTTGGCTCTTGCTAGAGATGATTCCAAAATCATTTGGTATCTGCTGTTTAATTCGGCTCTTGCATATTTTGTCAACCTGACCAACTTTTTGGTCACGAAACATACAAGTGCTCTGACCCTTCAGGTTCTAGGAAATGCTAAAGGTGCTGTAGCAGTAGTAGTTTCAATTCTAATATTCAGAAACCCAGTTTCGGTCACTGGAATGATGGGTTACTCACTCACAGTGTTTGGAGTTATACTCTATAGTGAAGCCAAAAAGCGAAGCAAGTGA 1209 0.4599 MAQIALIAPPTFIAITTGRGKHHLHELSYARKKPSFPLLVESRKMEKSQLFVSSNSGDERSRSVAVKVSEGGAISLPHGWPPQKKGSEDQIEGINRMKSSNRFFTVALVAAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYVAIAWMKLVPLQTIRSRVQFFKISALSLVFCVSVVFGNISLRYLPVSFNQAIGATTPFFTAVFAYLMTFKREAWLTYLALVPVVTGVIIASGGEPSFHLFGFIICVAATGARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITLALARDDSKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVFGVILYSEAKKRSK* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1014 402 PANTHER - 40 401 - -
Vra3g1014 402 PANTHER SOLUTE CARRIER FAMILY 35 40 401 - -
Vra3g1014 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 244 - -
Vra3g1014 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 396 - -
Vra3g1014 402 Pfam Triose-phosphate Transporter family 107 395 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1014 Vra-Chr3 10190652 10197122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1014 96 402 Organic Solute Cotransporters AT3G11320 90.228 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1014 - - vra:106757848 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1014 3 10190652 10197122 Vra6g0622 6 5687863 5691695 PCT