Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1005 ATGGATGTTTTTTCCGACAAGAACCAAACTTCTCAAAACAAAACAGATGGGGTTTCCTCTTGTGTTACCGATTCCACCGCAGACTCCAAGGAAACCAGTTTCTGTGCATCCACTTCTTCTGTTGCCGTTGAAGAAGCAAAGGCAAAAGGCTCTTCTTCACCCGCTCCTCTTGGTTGGCCCATTCTCAAGGCTACACTCTCCAAGCGCTCTAATTCTCATGAAAAAGAAAACGAACATAAATCTCACTTGGAAGACACTAAGCTTACTCGTATTGGTTTGAAGTTGTCAGAAGTTGACATGATGAAGGAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGTAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGTGCAACTGTATTTGGGCAATTATGGAGACTAGAACCCTTACCTTCTGAGAAGAAAGAAATGTGGCAGAGAGAGGTGGAGTGGCTTGTTAGTGTTAGTGATTACATTGTTGAGTTGATGCCTTCTTGGCAAACATTTCCTGATGGGAGTAAACTCGAGGTAATGACTTGCAGGCCTAGGACAGATATTTTTATTAACCTTCCAGCTCTTCGCAAACTTGACAACATGCTTCTCGAAATTTTAGATAGTTTCACTTCTACAGAGTTCTGGTATGTAGACCAAGGCATTGTAGCCGCAGATGCAGATGGTTCAGCCTCTTTTCGCAAAACAATTCAGCGGCAAGAAGAGAAGTGGTGGCTTCCCGTACCTCGTGTCCCTCCTGCAGGACTCAGTGAAGACTCAAGAAAACAGTTGAATCACTCTCGAGAATGTGCAAACCAAATACTAAAAGCAGCCATGGCTATCAACAACATTGCTTTGGCTGACATGGAAGTTCCCGAGTCATATTTGGAAGTTCTTCCTAAGAATGGAAGAACTTGCTTGGGGGATTTTATTTACCGTTACATAACATCAAATCAATTCTCCCAAGAGTACCTTCTTGATTGCTTAGACATATCCTCTGAACATGTTGCATTAGAGATTGCAAACCGTGTGGAAGCAGCGATTTATGTATGGCGCCGAAGAGTCCACACTCGGTTCTTACCATCCCCAAAGCCCAACCGTTCTACCCCAAAATCATCATGGGAAATAGTTAAGGACTTCATGGTTGATGGAGATAAGAGAGAATTGCTAGCAGATAGAGCTGAAAGCATTCTAGTTTCCCTGAAGCAGCGGTTCCCAGGCTTAAGCCAAACCACCCTTGATACCAGCAAGATCCAGTGCAATAAGGATGTGGGGAAATCCGTGCTAGAGAGCTACTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTAGCTCGCATTGATGATTTGCTATATGTGGATGACTTGACAAAACAGTCAGAGAGGTTTGCATTAGTTCCTACTACTACTACTACTACTACTGTTAAGGTGGTTTCTCAGCAGAAGAAGGTTACCCGTCCACATGCGGTGTCTGTCTCAGGCACTGTTACTCCGCACAAAGCAGCATTTAGCAGACCAAGCTTTTCACCAGCTTCTGTGCCACTCATTAGTCCTGCAAGAGGGGAGAGAACTCCTTTCCTCCATAACAATAGCATCAAACCTCATCGTCGTGGCTTTGCGGTGAGGAGAGTGCTGTCAAATTATCTTGGAGTAGAGACAAAGACCACTAAGATATGCAGCAACTCAACAGAGGTGAAATGTTCAAACCCAAGTAGCAAGAAAACTGAACAACAACGTGAGAAGAAACCATGCACACTCAAAAACAAAACCAAATGA 1800 0.4372 MDVFSDKNQTSQNKTDGVSSCVTDSTADSKETSFCASTSSVAVEEAKAKGSSSPAPLGWPILKATLSKRSNSHEKENEHKSHLEDTKLTRIGLKLSEVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPSEKKEMWQREVEWLVSVSDYIVELMPSWQTFPDGSKLEVMTCRPRTDIFINLPALRKLDNMLLEILDSFTSTEFWYVDQGIVAADADGSASFRKTIQRQEEKWWLPVPRVPPAGLSEDSRKQLNHSRECANQILKAAMAINNIALADMEVPESYLEVLPKNGRTCLGDFIYRYITSNQFSQEYLLDCLDISSEHVALEIANRVEAAIYVWRRRVHTRFLPSPKPNRSTPKSSWEIVKDFMVDGDKRELLADRAESILVSLKQRFPGLSQTTLDTSKIQCNKDVGKSVLESYSRVLESMAFNIVARIDDLLYVDDLTKQSERFALVPTTTTTTTVKVVSQQKKVTRPHAVSVSGTVTPHKAAFSRPSFSPASVPLISPARGERTPFLHNNSIKPHRRGFAVRRVLSNYLGVETKTTKICSNSTEVKCSNPSSKKTEQQREKKPCTLKNKTK* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1005 599 MobiDBLite consensus disorder prediction 570 599 - -
Vra3g1005 599 MobiDBLite consensus disorder prediction 581 599 - -
Vra3g1005 599 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 466 IPR005512 GO:0005085
Vra3g1005 599 ProSiteProfiles PRONE domain profile. 88 472 IPR005512 GO:0005085
Vra3g1005 599 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 16 571 IPR038937 GO:0005085
Vra3g1005 599 Coils Coil 595 599 - -
Vra3g1005 599 MobiDBLite consensus disorder prediction 1 33 - -
Vra3g1005 599 Gene3D PRONE domain, subdomain 1 91 330 - -
Vra3g1005 599 Gene3D PRONE domain, subdomain 1 331 472 - -
Vra3g1005 599 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 16 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1005 Vra-Chr3 10099107 10102680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1005 - - gmx:100796692 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1005 3 10099107 10102680 Vra6g0634 6 5836869 5840231 PCT