Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0981 ATGCAAATGCAAACTGGTTTTAATGCGGTAGAGGATCAATATGAGCTATGTGAGGCTGGATATCCAAACAAAACTGCTATAGCGTGCATGATAAATGCAGAGATTAGTGCTGTGTTGGCAGTTATGCGAAGAAATGTTAGATGGGGAATTCATTACATTTCAGATGATGATCAATCAGAGCACTACCTTGTTCAGTCATTAAAGACGTTGAGGAGGCAAATTTTCTCATGGAAGAATCAATGGCGTGCCATCAACCCTGCCTTGTATCTCCAGCCTTTTCTGGATGTGATACGATCAGATGAAACTAGTGCGCCTATTACTGGTGTTGCTTTGTCATCTGTTTACAAAATCTTAACTCTAGATGTGATTGATAAGCACACTGTCAACGTTGGGGATACCATGCACTTGGTGGTTGATTCCGTCACTAGTTGCAGATTTGAAGTGACTGATCCTGGATCAGAAGAAGTGGTATTAATGAAGATTTTGCAAGTTCTTCTAGCTTGTGTTAAAGTGTTTTTGCAGACCAATGGACTAAATAATGACCATGCTTTGGCAAGCAGAAAATTGGAAAATGATAGGCTTAATTCTGCACGTGATGCTCAACCATTATCTACAATCACTGCTTCCGGCGCTGCACCTGTTGTGGCAGCAAATGCAGTGGATGAAAACACAGCTATTGCTAGCAGTGGCAATGAAACTGATCCACACGAATCACTGCTCATGACTCATGGGGTTCCTTGTATAGTGGAAATATTTCACTTCTTGTGTTCTTTGCTGAATGTCACTGAGCATATGGGAGTGAATCCTAGATCAAACACAATGTCGTTTGATGAAGATGTGCCTCTTTTTTCGTTAACTTTGATTAATTCGGCCATAGAGTTGGGAGGGCCATCCTTTTGCCATCACCCAAGACTGCTGTGTTTAATCCAGGATGAATTATTCTTCAATCTTATGCAATTTGGCTTATCAATGAGCCCTCTTGTACTTTCAATGGTGTGTAGCATTGTTCTCAATTTGTATCAACATCTTCGTCAAGAACTCAAGTTACAGCTAGAAGCATTTTTTTCTTGCGTAATTTTGAGGCTTGCACAAAGCAAACATGGTGCCTCATATCAGCAACAAGAGGTTGTGATGGAAGCACTTGTTGATTTTTGCAGGCAAAAAACATTCATGGTGGAGATGTACGCCAACTTTGACTGTGACATAAGTTGCAGTGATATCTTTGAAGATATTATTGATTTGTTGTCCAAAAGTGCATTTCCTGTGAACAATCCATTATCTTCCATGCACATTCTTTCCTTAGATGGCCTTATTGCTGTAATGCAGGGAATTTCCGAAAGAATAGGTAGTGAATCTTTAGGTTCAGAACAATCTCCTGTGAATTTTGAGGAGTATACACCATTCTGGATGGAAAAGTGTGACAGTTTTGATGACCCAAATGATTGGGTTCCTTTTGTCTGCCAAAGAAAGTACATAAAGAGAAAATTAATGATAGGAGCTGATCACTTCAATCGGGATATTAAGAAAGGTCTTGAGTTTCTCCAAGGAGCACATCTTTTGCCTGACAAACCTGATTCCCAAAGTGTTGCCTACTTTTTAAGATACACAGCTGGGTTGGATAAGAATTCCATTGGTGATTTCCTTGGAGATCATGATGAATTCTACATTCAGGTTCTTCATGAATTTGCTAAGACATTTGATTTCCATGATATGACCTTAGACACAGCCCTACGTGTATTTTTGGAGACTTTTAGGCTTCCTGGAGAATCACAGAAGATACACAGGGTGCTTGAAGCTTTCTCTGAGAGATATTATGAACAATCACCAGATATCCTAGCTAACAAGGATGCTGCTCTCGTGTTATCATACTCAATTATATTGCTCAATACTGATCATCATAATGTGCAGGTCAAAAAGAAGATGACAGAAGAGGATTTTATCCGAAATAATAGGCATATAAATGGTGGCAATGATCTGCCTCGAGAATTTCTGTCAGAGATTTACCATTCAATTTGTAAGAGTGAAATTCGTACCACTCTTGAACCAGGCTCTGGATTTCCTGAAATGACCCCAAGTCGGTGGATTTCTCTGATGCACGAGGCAAATAAAACTTCTCCATACATTGTCTCGGACTCCCGAGCATACTTAGATTACGATATGTTTGTGTTGTTGTCAGGCCCAACAATTGTTGCCATTTCTGTGGCTTTTGATAATGCTGAAAATAAAGAGGTATATCAAAGATGTATGGATGGATTCTTAGTTGCTGCTAAGATATCAGCCCACTATCGTCTTGAAAATGTACTCGATGATCTGGTTGTGTGCATCTGTAAGTTCATTACCATTTTGGATCCATTATCAGTTGAGGATTCTGTCCTGGCCTTGGGAGATGACACAAAAGTAAGAATTGCAACTGAGACAGTTTTCACAATTGCAAATAGGTATGGTGATTACATCCGCACAGGGTGGAGGAGTATTCTTGATTGTATTTTAATATTTTACAAGTTAGGCCTCCTTCCTCCTCGCTTGGCCAGTGATGCAGCTGACGAGTCACAGGTAACTACAGAAATTGGACATGGAAAATCTAACTCATATTCTATAGTGTCATCTAATCTTCAATATATTGCTCCCAAGAGATCCTCAGGATTAATTAGTAGGTTTAGTCAACTCTTATCACTTGGTTCTGAAGAGATACAATCAATACCGACAAAAGAACAGATGGTTGCTCATCAGCAAGCTACACAAGCAATTCAGAAGTGTCACATTGATAGCATATTCACCGAGAGTAAATTTCTGCAAGCTGAATCTCTATTGAATCTTGAAAGAGCACTCATCAATGCTGGAGCTCAACATCGGAAAGGAAACAGAATACTTGAGGATGAAGAGTCTTCAGTTTTCTGCCTGGAGTTATTGGTGGCAATTATTCTGAATAACAGGGACAGAGTTGTACTTCTTTGGAAGGGTGTTTATGAACACATATCCAATATTATTCAGTCAACTGTGATTCCTTGTGCTCTGGTAGAAAAAGCTATTTTTGGACTTCTTAGAATTTGCCACCGCTTACTTCCCTACAAAGAGAACATTACTGATGAACTTTTGAGGTCCCTGCAACTTGTTTTGAAGCTTGACGCACTAGTTGCAGATGCATACTATGAGCAGATTACACGGGAAGTCGGTTGCCTTGTGAAGGCAAATGCTTCTCATATTAGATCTCAGTCTGGATGGCGGACTATTACAGCTCTGCTCTCGATCACTTCTAGACACCTGGAGTCATCTGAGGCTGGATTTGATGCGCTGCTGTTCATTATGTCTGATGGTGCTCACTTGCTCCCTGCTAATTACATTCTCTGTGTAGATGCTGCGAGACAGTTTGCCGAGTCTCGTGTGGGACAGGTAGATCGATCTATAATTGCACTAGATCTTATGGCAAGTTCTGTCAATTCCTTAGAAAAATGGTCGAATAATGCTAAGAAAACTGTGAAACAACAGGAAGTGGAAAAGATGTTGCAGGATATTGGGGAGATGTGGTTTAGGCTAGTGCAGGGACTGGGGAAAGTATCTTTGGACCAGAGAGAGGAGGTTAGAAACCATGCATTGTTATGTTTACAGAAGTGCTTGAAAGGAACTGTTGGGACTCACCTCCCACGTGATTTGTGGTTGACATGTTTTGATCAAGTGATCTTCACTGTGCTCGAAGACCTGCTTGAAATTGCGCAGTCGCATTCTCAAAAGGTCTACCCAAACATAGAAGGAACACTTGTTATTGCCTTGAAGCTTGTGTTTGAAGTTTTCCTCCAGTTACTCCTAGAACTATCACAATCGGCGTCCTTCTGCAAACTATGGGAGGGTGTTCTAAGCTGTATGGAAAAATGTATGAAGATGAAAATCAAAGGAAGAAGAAGTGAGAATCTTCAAGACCTTGTGCCTGAGCTTCTGAAGTACACTTTGCTTGTTATGAAATCTGGAGACATACTAGTGCAGATTAATAATGGTTCGGGAGAAAATAGTTTGTGGGAACTGACATGGCTACATATGAAGAATATTGCTCCCTCATTGCAATCTGAGGTGTTTCCTGAGCAAGATCCGGAGCAGCTACAGCACAGACAGGTTAAAGCAGTCGAAAGTTTGGGATCTGATGCAAATATTTCTGATCCTTCAAATGAAAAAGAGAGCAACGATGGAGTTGAGATCAGTTAA 4194 0.4044 MQMQTGFNAVEDQYELCEAGYPNKTAIACMINAEISAVLAVMRRNVRWGIHYISDDDQSEHYLVQSLKTLRRQIFSWKNQWRAINPALYLQPFLDVIRSDETSAPITGVALSSVYKILTLDVIDKHTVNVGDTMHLVVDSVTSCRFEVTDPGSEEVVLMKILQVLLACVKVFLQTNGLNNDHALASRKLENDRLNSARDAQPLSTITASGAAPVVAANAVDENTAIASSGNETDPHESLLMTHGVPCIVEIFHFLCSLLNVTEHMGVNPRSNTMSFDEDVPLFSLTLINSAIELGGPSFCHHPRLLCLIQDELFFNLMQFGLSMSPLVLSMVCSIVLNLYQHLRQELKLQLEAFFSCVILRLAQSKHGASYQQQEVVMEALVDFCRQKTFMVEMYANFDCDISCSDIFEDIIDLLSKSAFPVNNPLSSMHILSLDGLIAVMQGISERIGSESLGSEQSPVNFEEYTPFWMEKCDSFDDPNDWVPFVCQRKYIKRKLMIGADHFNRDIKKGLEFLQGAHLLPDKPDSQSVAYFLRYTAGLDKNSIGDFLGDHDEFYIQVLHEFAKTFDFHDMTLDTALRVFLETFRLPGESQKIHRVLEAFSERYYEQSPDILANKDAALVLSYSIILLNTDHHNVQVKKKMTEEDFIRNNRHINGGNDLPREFLSEIYHSICKSEIRTTLEPGSGFPEMTPSRWISLMHEANKTSPYIVSDSRAYLDYDMFVLLSGPTIVAISVAFDNAENKEVYQRCMDGFLVAAKISAHYRLENVLDDLVVCICKFITILDPLSVEDSVLALGDDTKVRIATETVFTIANRYGDYIRTGWRSILDCILIFYKLGLLPPRLASDAADESQVTTEIGHGKSNSYSIVSSNLQYIAPKRSSGLISRFSQLLSLGSEEIQSIPTKEQMVAHQQATQAIQKCHIDSIFTESKFLQAESLLNLERALINAGAQHRKGNRILEDEESSVFCLELLVAIILNNRDRVVLLWKGVYEHISNIIQSTVIPCALVEKAIFGLLRICHRLLPYKENITDELLRSLQLVLKLDALVADAYYEQITREVGCLVKANASHIRSQSGWRTITALLSITSRHLESSEAGFDALLFIMSDGAHLLPANYILCVDAARQFAESRVGQVDRSIIALDLMASSVNSLEKWSNNAKKTVKQQEVEKMLQDIGEMWFRLVQGLGKVSLDQREEVRNHALLCLQKCLKGTVGTHLPRDLWLTCFDQVIFTVLEDLLEIAQSHSQKVYPNIEGTLVIALKLVFEVFLQLLLELSQSASFCKLWEGVLSCMEKCMKMKIKGRRSENLQDLVPELLKYTLLVMKSGDILVQINNGSGENSLWELTWLHMKNIAPSLQSEVFPEQDPEQLQHRQVKAVESLGSDANISDPSNEKESNDGVEIS* 1398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0981 1397 CDD Sec7 493 676 IPR000904 GO:0005085|GO:0032012
Vra3g0981 1397 Gene3D - 486 568 - -
Vra3g0981 1397 Pfam Sec7 domain 493 676 IPR000904 GO:0005085|GO:0032012
Vra3g0981 1397 MobiDBLite consensus disorder prediction 1358 1397 - -
Vra3g0981 1397 Gene3D - 569 684 IPR023394 -
Vra3g0981 1397 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 174 1388 - -
Vra3g0981 1397 PANTHER PATTERN FORMATION PROTEIN GNOM PROTEIN 8 170 - -
Vra3g0981 1397 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 174 1388 - -
Vra3g0981 1397 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 8 170 - -
Vra3g0981 1397 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 246 407 IPR032691 -
Vra3g0981 1397 SMART sec7_5 489 676 IPR000904 GO:0005085|GO:0032012
Vra3g0981 1397 SUPERFAMILY Sec7 domain 489 681 IPR035999 GO:0005085|GO:0032012
Vra3g0981 1397 ProSiteProfiles SEC7 domain profile. 493 674 IPR000904 GO:0005085|GO:0032012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0981 Vra-Chr3 9873300 9880073 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0981 K18443 - gmx:100802024 2134.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0671 6 6229662 6237378 Vra3g0981 3 9873300 9880073 PCT