Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0778 ATGGGTTCCATTAAAAACCTTCTCATCACCATCGTGTCCCTGACTTCGCTTTTACAGTCCACCACCCACGCCTTCGTCCAATCTCCTTCTCCCTCCCCGTCTTCCTCCCAAACCCTCCTCGTAAACCCCAACAACATCCTCGGCGCACCATCCAACACAGTCGACAACCTCTTCAAACCCAGCCTCCACATCCTAGACTTCTGCCAAGACACAGAGAGCCCTGCGCTCTGCGTTGAAACTATTGCCCCATCCCTGGAAGGCACCTTCGACCCCATCAAGGCTCTCGAGACCGAAATGGAAGCCACATTTGCCCAAAGCAAGAAGGTCGCCAAGATCATCTCCGAGGCACTGAGAAACCCTAACACCGACCCAAGGGCACATGGCGCCCTCGCCATTTGCAAGTCTCAATACAGGAGCATTATGGAAACTGTGAACGATGCCGTGGAATTGTTGAACCAACAGAATGTGGTTGATGCTTATTACAAGTTCAGCTCCGTTCTCTCTGACCAAGCAACCTGTGAGGACGCGTTTGTGGAATCCCCCGGAGTTACCATTCCCTTCTCCGATGAATCTCACACTGTCTATCAGCTTGGTGGGAACTGCTTGGCCATCATGGAAGGGATGGTTAATAGTCGTAACCGTTTTATCTTGGTTTGA 657 0.516 MGSIKNLLITIVSLTSLLQSTTHAFVQSPSPSPSSSQTLLVNPNNILGAPSNTVDNLFKPSLHILDFCQDTESPALCVETIAPSLEGTFDPIKALETEMEATFAQSKKVAKIISEALRNPNTDPRAHGALAICKSQYRSIMETVNDAVELLNQQNVVDAYYKFSSVLSDQATCEDAFVESPGVTIPFSDESHTVYQLGGNCLAIMEGMVNSRNRFILV* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0778 218 SMART PMEI_2 59 204 IPR006501 GO:0004857
Vra3g0778 218 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 206 IPR006501 GO:0004857
Vra3g0778 218 Pfam Plant invertase/pectin methylesterase inhibitor 66 204 IPR006501 GO:0004857
Vra3g0778 218 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 207 IPR035513 -
Vra3g0778 218 CDD PMEI-like_2 66 205 - -
Vra3g0778 218 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 208 IPR035513 -
Vra3g0778 218 PANTHER PECTINESTERASE 5 212 - -
Vra3g0778 218 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 5 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0778 Vra-Chr3 7980221 7981248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0778 - - vun:114163609 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0778 3 7980221 7981248 Vra8g1305 8 28946083 28946727 PCT