Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0657 ATGACGGGGCAAGTCGTGGTCACCAGCGTTGGCGGATGCGGTGGTGGGAAGGGGCGGAGAGCCGCGGAGGACGACCAAAACCCGGCGTCGCCGGTGGCGGTTCTGTTGGCGGCACTGAGGAAATCGATGGTGGCGTGCAGTGTGGACAGTCCCGACGATGTAATCTCTGCCGTCCATCACCCCATGGAGATTGGATGGCCCACAAACGTGAAGCATGTTAGTCATGTCACTTTCGATCGCTTCAATGGGTTTCTGGGTCTTCCCCTTGAGCTCGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGTGTCCCCACCATTCTACTGCTAATGCAAGAACGATTATACTCACAGGGTGGCCTAAAGGCTGAAGGTATATTTCGCATAAATCCAGAGAACAGTGAAGAGGAGCATTTAAGGGAGCAGTTGAATAAGGGTATTGTGCCTGATGACATTGATGTCCACTGCTTGGCAGGCCTAATCAAAGCATGGTTCAGAGAGCTTCCTTCAGGAGTCCTCGATGGACTTTCCCCTGAGCAAGTTATTGAGTGCAACACAGAAGAAGAGTCCGTTCAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCAGCCTTGCTCAACTGGGCCATTGATCTCATGGCTGATGTTGTAGCTGAAGAGGATTACAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTGCAAGTGATGAATTTACTGAAGACACTAATACTGAACACACTGAGAAAACGTGAAGAAACAGCCGAAGGAGGATATTCGCCCATGTCATTTCGTTCATCTGATCGCCAATCTGAGGGTGACTATGATAGTCAACAAGAAATGGATACTAGTGGTGAATTGAGGGAGACCAAGTCAGAAGATGATGATGATGATGACCATCATAATCATCATGTTAACTACAGTCCTACCAGTGAAGAGGACGAGGAGGCTGATGCATCATCAGTAAGTGAGATAGTGGAGTGCTTCTTGAAACGTTTGGATGAGAAAACAAAAAGATTCTCGGAAAAACCTGATGGGTATTTAAAAGAGAAATTAGAGAGCCCCAAGAGTTTCTCTTTAGATAATATCTTGGAATCCACTTTATCTTTTACTGACATAAAAACTGAGAATTCCTGCTCAAGTTCCTCTTCCGAAGATGACTCAAGAACAACTCTTACTGCCGAGGAATCAAACGCTGACACAAGTAGTTCATCAATAGGAAGCACAAGCACCAATGATGTGGAGATGATCGATAAATTTCCAGATCCTCTTTCTCTAGTTCCACTGTTTGCATCTAGTTAA 1416 0.4597 MTGQVVVTSVGGCGGGKGRRAAEDDQNPASPVAVLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSEEEHLREQLNKGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVIECNTEEESVQLVKQLKPTESALLNWAIDLMADVVAEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILNTLRKREETAEGGYSPMSFRSSDRQSEGDYDSQQEMDTSGELRETKSEDDDDDDHHNHHVNYSPTSEEDEEADASSVSEIVECFLKRLDEKTKRFSEKPDGYLKEKLESPKSFSLDNILESTLSFTDIKTENSCSSSSSEDDSRTTLTAEESNADTSSSSIGSTSTNDVEMIDKFPDPLSLVPLFASS* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0657 471 MobiDBLite consensus disorder prediction 292 359 - -
Vra3g0657 471 Pfam RhoGAP domain 126 260 IPR000198 GO:0007165
Vra3g0657 471 MobiDBLite consensus disorder prediction 307 349 - -
Vra3g0657 471 PANTHER MKIAA1688 PROTEIN 1 471 IPR044785 GO:0005096
Vra3g0657 471 MobiDBLite consensus disorder prediction 412 452 - -
Vra3g0657 471 Gene3D Rho GTPase activation protein 96 289 IPR008936 GO:0007165
Vra3g0657 471 Gene3D CRIB domain 59 95 IPR036936 -
Vra3g0657 471 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 471 - -
Vra3g0657 471 CDD CRIB 62 92 - -
Vra3g0657 471 SUPERFAMILY GTPase activation domain, GAP 105 284 IPR008936 GO:0007165
Vra3g0657 471 CDD RhoGAP 126 284 - -
Vra3g0657 471 Pfam P21-Rho-binding domain 63 91 IPR000095 -
Vra3g0657 471 ProSiteProfiles CRIB domain profile. 64 77 IPR000095 -
Vra3g0657 471 SMART PBD_5 64 98 IPR000095 -
Vra3g0657 471 ProSiteProfiles Rho GTPase-activating proteins domain profile. 109 289 IPR000198 GO:0007165
Vra3g0657 471 SMART RhoGAP_3 123 286 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0657 Vra-Chr3 7089948 7093271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0657 - K20642 gmx:100812700 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0657 3 7089948 7093271 Vra3g0657 3 7089948 7093271 ECH
Vra3g0657 3 7089948 7093271 Vra8g1190 8 27120055 27123157 PCT