Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0631 ATGGATTTGGAATCTTCTGGGGATTCGGTGAAATGTTGCAAGCACTGCGAATGTGGGTGTAGTGATTGCTCCATGGCAGCGCAATCTTCAAGGAATTGGTCCCGTTGTGTGAAAAGGAAACACAAGGAGTTGGAACGGGGCGGGCAATTCTCTGTGCCAGGGCTGGATTGCGATCCAGTGGCGCGTGTTGACATTGGAAATGAATGTGAAGCTTTACGGCAGGCTGTTAGCAGTCAACAACAATCAATACAGGATTTGTATGCTGAATTGGAGGAGGAGAGGAGTGCTGCCTCCTCTGCTGCGAATGAGACCATGTCAATGATATTAAGGTTGCAGAGGGAGAAGGCAGAGCTTCAGATGGAAGCGCGACAGTTCAAGAGATTTGTGGAGGAGAGAACGGTTTACGATCAGCAGGAGCTTCTGTTGTTGGAGGATATGTTGTATAAGAAGGAACAGGCTATTCACTCGCTCACCTGTGAGGTGCAGGCTTATAAGCACAGGTTGATGAGTTTTGGCCTCACTGAATCCGAGGCAGAAGGTGATCAGGATGAATTTCCCCCTTACGAGTACCCTCCTTTGAAATGTAAGGCAATGCATACTTGTGCTGATACAGACAATGATGACATAGACATTGATAAATATGCTTTTGGGGAAACTCCTAAGGACAGATTGAGGAACTTAGAAAGTAGGATATCTCAGATGGAGAGAAGCCCCACTTATAGCCAGGTGGATGGGGAATTTGGTGGAAAAAATATTTTTGACAAGGTGATAGTTGGACAGTCTCCAAGATGGACCAAACATTCCAGGAAATTTTCTTGTGACTCGTCTTCACTGTGTCCGGAGTATATGGCGGATTCCCCTAGCTTTAGGAAGATGGATTCTCCGTCACAATTGGGAGACCTTCCCAACTTGAAGAAGATGGATAATGTATCAGAAGCTGGTGACGATATGATTGATAAAGTCTATACAATTGACTCCGAGTTCAAAACTGGAGTTAATGTTTGCGATGATTATGCAAGCACTCCAAAGGACTATGTTAATAACACCGATTTTGAAGATCCATACGTAAAGAAGCTTTACATGAGACTTCAAGCACTTGAGGCTGATAGGGAATCAATGAGGCAGGCAATCATTTCCATGCGCACTGATAAAGCACAACTTGTTTTACTGAGAGAAATCGCTCAGGAATTGTGCAAAGAGATGTCAGAGCAGAAAAGAATGGCAGCGAGGTCCTTTATTGGCAGCTTCTCATTCTTGACAGTTTTCAAGTGGATTGCATCAATTGTTTTCTGGAGAAAGGAAGCTCATAAAATCAAGTATATGTTCGGGCTACCGTCTGACAGCGTAGGCTTGCTAATGCTGCTTGACAAAGGACCCCGTGTAAGGTCATGGAGATATATTCAGAGTACACAAGTGGGAGAGTAG 1425 0.4456 MDLESSGDSVKCCKHCECGCSDCSMAAQSSRNWSRCVKRKHKELERGGQFSVPGLDCDPVARVDIGNECEALRQAVSSQQQSIQDLYAELEEERSAASSAANETMSMILRLQREKAELQMEARQFKRFVEERTVYDQQELLLLEDMLYKKEQAIHSLTCEVQAYKHRLMSFGLTESEAEGDQDEFPPYEYPPLKCKAMHTCADTDNDDIDIDKYAFGETPKDRLRNLESRISQMERSPTYSQVDGEFGGKNIFDKVIVGQSPRWTKHSRKFSCDSSSLCPEYMADSPSFRKMDSPSQLGDLPNLKKMDNVSEAGDDMIDKVYTIDSEFKTGVNVCDDYASTPKDYVNNTDFEDPYVKKLYMRLQALEADRESMRQAIISMRTDKAQLVLLREIAQELCKEMSEQKRMAARSFIGSFSFLTVFKWIASIVFWRKEAHKIKYMFGLPSDSVGLLMLLDKGPRVRSWRYIQSTQVGE* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0631 474 Coils Coil 356 383 - -
Vra3g0631 474 ProSiteProfiles GTD-binding domain profile. 67 165 IPR007656 -
Vra3g0631 474 Pfam Zein-binding 71 161 IPR007656 -
Vra3g0631 474 PANTHER ZEIN-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 449 - -
Vra3g0631 474 PANTHER BNAANNG28530D PROTEIN 1 449 - -
Vra3g0631 474 Coils Coil 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0631 Vra-Chr3 6886367 6889799 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0631 - - pvu:PHAVU_001G198800g 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0631 3 6886367 6889799 Vra3g0631 3 6886367 6889799 ECH
Vra3g0631 3 6886367 6889799 Vra8g0174 8 2030487 2035578 PCT