Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0446 ATGTTTAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCCTCCTTCGGTCCGCCGGTGATGGCCGCTGCTCCGGAGGTGGTGGTGCCGCCGCCTACGGGGACCATAGAGCCGCTGCCGCTGTTCCGCGATGTGCCCGTGTCGGAGCGGCAGACCCTGTTCATTCGGAAGCTTCAGATATGCTGCCACGTGCTGGACTTCTCGGACACTCTGAAGAGCATTCGCGAGAAGGAAATCAAGAGGCAGACGCTGATGGAGCTCGTGGATTTCATACAATCGGGTTCGGGGAAGATAACCGAGACTTGCCAGGAGGAGATGATCAAAATGGTGGCCGTCAATATCTTCCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAACCCACCGATCCGGAGGAAGAGGAGCCGTGCCTTGATCCCGCGTGGCCGCACCTTCAGCTTGTCTACGAGCTTCTCCTCAGATACATCGTTTCCTCTGATACTGACACAAAGGTTGCGAAACGGTACATTGATCATTCTTTTGTCCTCAAACTGCTTGATTTGTTTGACTCCGAGGACCCCCGTGAGCGTGAGTACTTAAAAACCATATTACATCGCGTGTACGGGAAATTCATGGTTCATCGCCCCTTTATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGCGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGCATTATCAATGGCTTTGCTCTGCCGATGAAAGAAGAACATAAGCTGTTTTTATCTAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGCGGTGTATCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTTCAAGCTCGCCGATGCAGTTATTAGGGGCTTGTTGAAGTATTGGCCCGTAACTAATTGCCAGAAGGAGGTTCTCTTTCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACGCAAGCTGCGGAATTCCAACGCTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAACTCTCTTTTTGTGGAATAATGAGCACATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTCGAAGCACTGGAGAAAAATATCCAGAGTCATTGGAACCAGGCTGTTCACGGATTGACCGTGAACGTTCAGAAAATGTTCATAGAAATGGATGCAGAATTATTTGAAGAATGTCAGAGACAGTATGCAGAGAGGGAGGCTAAAGCAAAGGATTTAGAAGAGCAGCGGGAATTGAATTGGAAAAGACTGACAGATGCAGCTGCACAGAATGGGGTGGATATGGTCACAGCTTAG 1407 0.506 MFKRIMKGGQKKPSKTDPSDPSSFGPPVMAAAPEVVVPPPTGTIEPLPLFRDVPVSERQTLFIRKLQICCHVLDFSDTLKSIREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVAVNIFRCLPPASHENTGQEPTDPEEEEPCLDPAWPHLQLVYELLLRYIVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLSRALLPLHKPKPVAVYHQQLSYCIAQFVEKDFKLADAVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQVARCLNSSHFQVAERTLFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIQSHWNQAVHGLTVNVQKMFIEMDAELFEECQRQYAEREAKAKDLEEQRELNWKRLTDAAAQNGVDMVTA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0446 468 MobiDBLite consensus disorder prediction 1 30 - -
Vra3g0446 468 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 47 458 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vra3g0446 468 Gene3D - 54 457 IPR011989 -
Vra3g0446 468 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 467 - -
Vra3g0446 468 Coils Coil 426 446 - -
Vra3g0446 468 PIRSF PP2A_B56 31 466 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vra3g0446 468 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 467 IPR002554 GO:0000159|GO:0007165|GO:0019888
Vra3g0446 468 SUPERFAMILY ARM repeat 59 440 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0446 Vra-Chr3 5166550 5172370 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0446 K11584 - gmx:100798308 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0446 3 5166550 5172370 Vra3g0446 3 5166550 5172370 ECH
Vra3g0446 3 5166550 5172370 Vra8g2126 8 39188919 39196191 PCT