Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0355 CTTCTTCTTCATCATCATCATCATCATCAGAGAGTACCCCCAATGTTCAGTCTGCTATCTCCTAGCAGGGCTTTACCCATGGATTCTCTTCCAAAACTGCGCCACCCTAATATCACTCTCAATCAACACACTTTACCATTTCCCACGCTCTTATCCTCTTCTCTCTCTTTCCGCTCTCGACCTCCATCACAGTTTTCCTCTTCGTCGTCGTCGTTCAGGTTGCCTTCCATCAGAGCTTCCATTTCACGCTCCTCAAACGACCCCGCGTCTCCCACCTCCAAAAACGCCCTCTCTCTATCCCCATTTCTCCAAACCCTAAACTCCTTCCTCGCCCCCCTCGCCCAAACCACCTGCATCGTCATCGCTGCCACCGCCTTCTTCTTCATGCGCTTCCACCACACGCCCGCCACTGCCGTCACTCTCTCCCCGCCCGCTGCCGACTCTGAGACTGCGTTCACCGAGGAGGAAGCCGAGAGAGTTCTGGAGGAGCGGCTCAGCGCCAACCCTGCCGACGTCGACGTGCTCCGCGCGCTCATGGAGTGCAAGATCAAAGCGCGCAAGATTGACGAAGCGTTCGGAGTTCTGGACCGTCTCATCGAGCTCCAGCCGGAGGAGTACGAGTGGCCGCTGCTGAAGGCCAACATGCATATCTACAACGACAACCACGCGGCTGCACGTGAACTGTTCGAGGAAATGTTGAAGAAGGACCCGCTCCGCGTGGAAGCGTTCCACGGCCTCGTCATGGCGACTTCGCAGTTGAACGAGCCGTTGAAAGCGTTGTTGAAAAGAGTGGAGGAGGCGACTGAGGCGTGCAAGAAGCAGAATAGGAACTCGGATGTGAGGGACTTCCGGCTCTTGATCGCGCAGATTAAAGTGATGGAAGGGAATTTCCCTGAGGCTCTTAAGGCTTATCAGGATTTAGTGAAGGAAGAGCCCAGGGATTTCAGGCCTTATTTGTGTCAGGGTATTATATATACCCTCTTAAGGAAGAAAGACGAAGCTGATAAGCAGTTTGATAAGTTTCGCAGGCTTGTTCCTAAGGACCATCCTTACATGGAATATTTCGAGGACAACATGTTCGCGACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCAGGTGTTAGGGACTGA 1137 0.5339 LLLHHHHHHQRVPPMFSLLSPSRALPMDSLPKLRHPNITLNQHTLPFPTLLSSSLSFRSRPPSQFSSSSSSFRLPSIRASISRSSNDPASPTSKNALSLSPFLQTLNSFLAPLAQTTCIVIAATAFFFMRFHHTPATAVTLSPPAADSETAFTEEEAERVLEERLSANPADVDVLRALMECKIKARKIDEAFGVLDRLIELQPEEYEWPLLKANMHIYNDNHAAARELFEEMLKKDPLRVEAFHGLVMATSQLNEPLKALLKRVEEATEACKKQNRNSDVRDFRLLIAQIKVMEGNFPEALKAYQDLVKEEPRDFRPYLCQGIIYTLLRKKDEADKQFDKFRRLVPKDHPYMEYFEDNMFATKFFSQKLEREGAGVRD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0355 378 Coils Coil 257 277 - -
Vra3g0355 378 SUPERFAMILY TPR-like 155 349 IPR011990 GO:0005515
Vra3g0355 378 Pfam Tetratricopeptide repeat 285 313 IPR019734 GO:0005515
Vra3g0355 378 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 27 371 - -
Vra3g0355 378 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 27 371 - -
Vra3g0355 378 Gene3D Tetratricopeptide repeat domain 143 360 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0355 Vra-Chr3 4265793 4270208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0355 - - vra:106756779 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0355 3 4265793 4270208 Vra8g0949 8 21062174 21079135 PCT