Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0298 ATGGGTACACTCAAAACAAAACACCACATTCACACGCTCCTCTTTCTCACTGCACTCATCTTTTTCCTTTCCACACCCACATCCCTTGCAGACAACACAAACTTGATCTACAAGGGTTGCGCAGACCAGAAACTGCAACAACCCTACTCGCAGAATCTCAAACCCCTGTTATCTTCCTTGCTGGCAGAGTCTGCGCAAAAGGGTTTCGCCGCCACTACGCAGAACGGGCTCACCGGCGCCTACCAATGCCGAGGAGACCTCACCAGCTCCGACTGCCACAGCTGCGTCGCCAAGATTCTGGACATGCTGGGGCGCCTCTGCGGCGAGGCGGCTGCGGCCGCGCGAGTCCAGCTCAGCGGGTGCTACCTGCGGTACGAGGTGGTCGGGTTCAAGCAGGTTGCGGCGACTCAACTCCTGTACAAGGTTTGTGGGGCCCGCAGGGTTGTCGACGGCGGAGGGTTCGAGGCGAGGAGGGACGCGGCGTTTGGGATGGTGGAGAACGGCGTGCAGAGCAGTGGGAACTTGTTCTACACTGGGAGTTACCAGAGCCTCTATGTGTTGGGACAGTGCGAGGGTAATTTGGGAAATGCAGATTGCGGGGATTGTATCAGGAGTGCCGCGGAACAGGCTAAGGATCAGTGTGGCTACTCTATTTCCGCGCAGGTTTATCTTCAGAATTGTTACATCAGTTACAGCTTTTACCCCAACGGAGTTCCCACCTCTTCTTCTTCCTCAGGATCAGAGGGAGGAGGGCATCCACACACGGAGAGGACGGTGGCGCTCGCGGTGGGTGGGGTGGCGGCTCTGGGATTCTTGATCGTTTGCATGCTATTTCTGAAGTCGGTGTTAAAGAGAAGAGGTGGGAAGCGTTAG 873 0.5647 MGTLKTKHHIHTLLFLTALIFFLSTPTSLADNTNLIYKGCADQKLQQPYSQNLKPLLSSLLAESAQKGFAATTQNGLTGAYQCRGDLTSSDCHSCVAKILDMLGRLCGEAAAAARVQLSGCYLRYEVVGFKQVAATQLLYKVCGARRVVDGGGFEARRDAAFGMVENGVQSSGNLFYTGSYQSLYVLGQCEGNLGNADCGDCIRSAAEQAKDQCGYSISAQVYLQNCYISYSFYPNGVPTSSSSSGSEGGGHPHTERTVALAVGGVAALGFLIVCMLFLKSVLKRRGGKR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0298 290 Pfam Salt stress response/antifungal 44 126 IPR002902 -
Vra3g0298 290 Pfam Salt stress response/antifungal 174 233 IPR002902 -
Vra3g0298 290 Gene3D - 32 130 IPR038408 -
Vra3g0298 290 Gene3D - 134 235 IPR038408 -
Vra3g0298 290 ProSiteProfiles Gnk2-homologous domain profile. 136 236 IPR002902 -
Vra3g0298 290 ProSiteProfiles Gnk2-homologous domain profile. 31 130 IPR002902 -
Vra3g0298 290 PANTHER PLASMODESMATA-LOCATED PROTEIN 1 11 287 - -
Vra3g0298 290 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 11 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0298 Vra-Chr3 3541220 3542722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0298 5 232 Receptor kinase-like Gene Family AT5G40380 26.471 6.81e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0298 - - gmx:100786830 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0298 3 3541220 3542722 Vra3g0298 3 3541220 3542722 ECH
Vra3g0298 3 3541220 3542722 Vra8g0907 8 20179210 20180570 PCT