Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0294 ATGGCTTCTTCTAGCTTTGAAAGTTCTCCCATGGCTTCCAACTACAAAAGCAACAAAAAAAGGCACAACAATGGCATGTTCCATCATCAACCCACCCCAGTGGTGGTGGTGGTGGTCCCTTTCCCTGCACAGGGCCACCTGAACCAGCTCCTCCACCTCTCTCGCCTCATCTTGGCTCACAACATCCCTCTCCACTTCGTCGGCTCTCCCACACACAACCGCCAAGCCATGGTTCGATCTCAAGGTTGGGATCCAAACTCCTTTCCCCACATTCACATTCACGACTTCAATGTTCCTCCTTTTCTCTCCCCTCCCCCAAACCCCAATGCCCCAACCAAATTCCCCTCCCACCTTCTTCCCTCCTTTCAGGCCTCCGCAAGCCTCCGTGGACCTGTTTTTTCACTCTTGCAGTCTCTCTCCCTTGTGGCCAAAAGGGTCGTTGTCATCTACGACTCTCTCATGGCTTCCGTGGTGCAAGATGCCATCCATGTCTCCAACTGCGAGACCTACACTTTCCACAGCGTCTCCGCCTTCACCATGTTCTTATACTTTTGGGACGTAATGGGGAAGCCTCCGGTGAACAAAATGTCCCACCTAGTCCCCGAAGTTCCCACTCTTGAAGGCTGCTTCACCACCCAGTTCCTTGATTTCATCACCTCTCAGTATGTGTTTCACAAGTTCAGCAAAGGTATCATATACAACACCACAAGGGCAGTTGAGGGACCTTACATGGAGCTGATAGAGAGGATCATCAGCAGCAAGAACCACTGGGCTCTGGGGCCATTCAACCCCTTGTCCATTGAGAAGAGTGAAAAAAGGCAGCACTTTTGCATTGAGTGGCTTGACAAACAAGAGGAAAGGTCAGTGATGTATGTGTCCTTTGGGACAACAACAAGCTTCTCCCAGGAACAAATCAAGGAGGTTGCAAATGGGTTGGAGAAGAGCAAGCAAAAGTTCATTTGGGTGTTGAGGGATGCTGACAAGGGAGATGTTTTCAAGCATGGTGGTGATGAACTTGTTCTCCCAAAGGGGTTTGAAGAGAGAGTGAAAGGCATTGGGTTGGTGGTGAGAGAGTGGGCACCCCAATTGGAGATCCTTAGCCACACTTCAACTGGGGGGTTCATGAGTCACTGTGGATGGAACTCTTGCATGGAGAGCATCTCCATGGGGGTGCCAATAGCAGCATGGCCTATGCACTCTGACCAACCTAGGAATAGAGTTTTGGTGACTGATGTGCTTAAGGTTGGAGTGGTGGTGAAGGAATGGGACCGCAGAGATGAGTTGGTGACAGCATCAGCTGTTGAGAATGCCGTAAGAAAATTGATGGCAACAAATGAGGGAAATGAGATGAGACAAAGGGCCATGGACCTCAAAAATGTCATTCTCAAATCCAGGGATGAAGGAGGAGTTTCTCGGATGGAATTTGATGATTTCATTGCTCACGTCACTCGATAG 1455 0.4976 MASSSFESSPMASNYKSNKKRHNNGMFHHQPTPVVVVVVPFPAQGHLNQLLHLSRLILAHNIPLHFVGSPTHNRQAMVRSQGWDPNSFPHIHIHDFNVPPFLSPPPNPNAPTKFPSHLLPSFQASASLRGPVFSLLQSLSLVAKRVVVIYDSLMASVVQDAIHVSNCETYTFHSVSAFTMFLYFWDVMGKPPVNKMSHLVPEVPTLEGCFTTQFLDFITSQYVFHKFSKGIIYNTTRAVEGPYMELIERIISSKNHWALGPFNPLSIEKSEKRQHFCIEWLDKQEERSVMYVSFGTTTSFSQEQIKEVANGLEKSKQKFIWVLRDADKGDVFKHGGDELVLPKGFEERVKGIGLVVREWAPQLEILSHTSTGGFMSHCGWNSCMESISMGVPIAAWPMHSDQPRNRVLVTDVLKVGVVVKEWDRRDELVTASAVENAVRKLMATNEGNEMRQRAMDLKNVILKSRDEGGVSRMEFDDFIAHVTR* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0294 484 ProSitePatterns UDP-glycosyltransferases signature. 359 402 IPR035595 -
Vra3g0294 484 CDD GT1_Gtf-like 40 472 IPR002213 GO:0008194
Vra3g0294 484 PANTHER GLYCOSYLTRANSFERASE 28 484 - -
Vra3g0294 484 MobiDBLite consensus disorder prediction 1 20 - -
Vra3g0294 484 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 35 484 - -
Vra3g0294 484 Gene3D Glycogen Phosphorylase B; 270 466 - -
Vra3g0294 484 MobiDBLite consensus disorder prediction 1 27 - -
Vra3g0294 484 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 281 445 IPR002213 GO:0008194
Vra3g0294 484 PANTHER GLYCOSYLTRANSFERASE 28 484 - -
Vra3g0294 484 Gene3D Glycogen Phosphorylase B; 36 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0294 Vra-Chr3 3461331 3463170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0294 37 471 Glycosyltransferase AT2G36780 30.208 8.54e-59 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0294 K13495 K13492 gmx:100783479 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0294 3 3461331 3463170 Vra3g0294 3 3461331 3463170 ECH
Vra3g0294 3 3461331 3463170 Vra8g0320 8 4151348 4154149 PCT