Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0249 ATGGGAGAAGCACCAGCATTGCTTGTTGATGACCTGCAGGATGGGGCTCACAATGGCTTTGAATTGAAAACCGGAATTTGCAAAGCAACTGCTACCGTTGGTGATAAGACGTATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCGTAATCTTGGAGAATGGGTTCGTCCAACTGTGAGGGGCACCAAACCCGTATCGTGCAAAGGCCTTTCAGCAGTGGCTTTGGAAGACAAAATACTGATTCTTAAGAAGGGTTCTAAGCCAGATGATCAAATATGGTTCCTGGAGGTTGACACCCAATATGTTAGGCAGCAGCAAGAATATTTGGGGACTGAGGTGGTTGCATGGAGTAAAGGTGTGGTAGGAAATGCTGAGAAGCCTGTTGTAATTAGTGGTCCTTCTGGAGTAGGCAAAGGAACATTGATAGCAATGCTTATGAAGGAGTTTCCATCTATGTTTGGTTTTTCTGTGAGCCACACTACCCGTGCTCCGAGAGGTATGGAGAAGGATGGGGTCCATTATCATTTTACTGAGAAGAGTATAATGGAGAAAGAAATCAAAGAGGGAAAGTTTCTTGAGTTTGCTTCTGTCCATGGTAATCTGTATGGAACAAGTGTTGAGGCGGTGGAAGTGGTGGCAGATGCAGGGAAAAGATGTATTCTTGATATTGATGTTCAAGGTGCAAGATCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTGTATGTCCCCCGTCAATGGAGGAGCTGGAGAAGCGCCTTCGTGACCGAGGGACAGAGACTGAGGAACAGATCCTGAAGCGACTAAGGAATGCCGAGGCTGAGATTGAGCAAGGCAAATCTTCTCACATATTTGATTTCATCCTGTACAATGACAAACTTGTCGAGTCTTACGACAAACTTAAGAAACTATTGGGACTTGATGATTTTGTCACTACTACTAAATCAGGCCATGGAGAGATTGATCTACCAATTGACCATTCAGTGTCAAAAATTGATAACAAAATCATCATAAATCGCATCTCCTCAGGAGAGAAGGAATCAAAAAATTTGATCATATTAGATGTTTCCTCGCTAAAAGGAGGTGCACCTGGACGGACCAGAGGCCTAAATTTCCAAGCAATTGGCTCGTTCTCCAATGGCTTGACTGAGATAGAAGGACTTAGCTAA 1197 0.4361 MGEAPALLVDDLQDGAHNGFELKTGICKATATVGDKTYVIGGADDGTLSIEVQIFDRNLGEWVRPTVRGTKPVSCKGLSAVALEDKILILKKGSKPDDQIWFLEVDTQYVRQQQEYLGTEVVAWSKGVVGNAEKPVVISGPSGVGKGTLIAMLMKEFPSMFGFSVSHTTRAPRGMEKDGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAEAEIEQGKSSHIFDFILYNDKLVESYDKLKKLLGLDDFVTTTKSGHGEIDLPIDHSVSKIDNKIIINRISSGEKESKNLIILDVSSLKGGAPGRTRGLNFQAIGSFSNGLTEIEGLS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0249 398 SUPERFAMILY Galactose oxidase, central domain 29 112 IPR011043 -
Vra3g0249 398 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 322 - -
Vra3g0249 398 PANTHER GUANYLATE KINASE-RELATED 1 322 - -
Vra3g0249 398 Pfam Guanylate kinase 133 314 IPR008145 -
Vra3g0249 398 CDD GMPK 135 254 - -
Vra3g0249 398 Gene3D - 22 129 IPR015915 GO:0005515
Vra3g0249 398 Coils Coil 271 291 - -
Vra3g0249 398 SMART gk_7 132 318 IPR008145 -
Vra3g0249 398 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Vra3g0249 398 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Vra3g0249 398 Gene3D - 130 318 IPR027417 -
Vra3g0249 398 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Vra3g0249 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0249 Vra-Chr3 2821630 2824963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0249 K00942 - gmx:100808931 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0249 3 2821630 2824963 Vra3g0249 3 2821630 2824963 ECH
Vra3g0249 3 2821630 2824963 Vra8g0290 8 3753444 3757134 PCT