Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0240 ATGGCTATTGCTGCAGCAGCTGTCGTCGTGCCATTGGGTCTCCTCTTCTTTGCCTCCGGCCTCCTTGTTAATCTCATTCAGGCGATATGCTATGTTGTATTAAGGCCGGTGTCGAAGAATTTGTACCGTCGGATCAACCGGGTTGTAGCGGAATTGTTGTGGCTGGAACTTATATGGCTTATTGATTGGTGGGCAGGAGTTAAGGTCCAAATATTCACAGATCATGAAACCTTTCGTTTAATGGGTAAAGAGCATGCGCTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAAGATGAAAGCACATTAAGGTTAGGCATCCAACGACTGAGTGATTATCCTCTTCCCTTTTGGTTGGCTCTCTTTGTAGAAGGAACACGCTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCCACTTCCACTGGATTGCCTGTTCCTAGGAATGTTTTAATTCCAAGAACTAAGGGTTTTGTTTCCGCAGTTAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCTGTCCCAAAGAATTCCCCTGCTCCTACATTGCTAAGACTCTTCAAAGGGCAACCTTCAGTGGTGCATGTTCACATCAAGCGGCATTTAATGAAGGAAATGCCAGAAACAGACGAGGCCGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTCTATTAGACAAACATATGGCTGAGGATACGTTTAGTGACAAAGAGCTGCAGGATGCTGGTCGACCAATAAAGTCTCTTCTGGTAGTGATATCTTGGGCCTGTCTAATTGTTGCGGGGTTTCTAAAGTTCCTACAACGGTCTTCGCTACTATCTTCATGGAAGGGTGTTGCATTCTCAGCTGTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTTTGATTCAATTCTCGCAGTCAGAGCGTTCAAACCCAACTAAGATCGCACCTGCTCAGTCAAAAAACAAGGGGGAACAACTAGAGGCTAGGAATGACAAGCAACAGTAG 1164 0.4476 MAIAAAAVVVPLGLLFFASGLLVNLIQAICYVVLRPVSKNLYRRINRVVAELLWLELIWLIDWWAGVKVQIFTDHETFRLMGKEHALVISNHRSDIDWLVGWVSAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDESTLRLGIQRLSDYPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAVPKNSPAPTLLRLFKGQPSVVHVHIKRHLMKEMPETDEAVAQWCRDIFVAKDALLDKHMAEDTFSDKELQDAGRPIKSLLVVISWACLIVAGFLKFLQRSSLLSSWKGVAFSAVGLAVVTALMQILIQFSQSERSNPTKIAPAQSKNKGEQLEARNDKQQ* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0240 387 MobiDBLite consensus disorder prediction 362 387 - -
Vra3g0240 387 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-LIKE PROTEIN 7 376 - -
Vra3g0240 387 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 7 376 - -
Vra3g0240 387 SMART plsc_2 86 208 IPR002123 GO:0016746
Vra3g0240 387 CDD LPLAT_LCLAT1-like 62 253 - -
Vra3g0240 387 Pfam Acyltransferase 80 228 IPR002123 GO:0016746
Vra3g0240 387 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Vra3g0240 387 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 41 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0240 Vra-Chr3 2738403 2746925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0240 3 385 Miscellaneous Gene Families AT3G57650 72.423 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0240 K13523 - gmx:100792858 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0240 3 2738403 2746925 Vra3g0240 3 2738403 2746925 ECH
Vra3g0240 3 2738403 2746925 Vra8g0272 8 3513536 3524202 PCT