Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0230 ATGGGTTTGGAGTTGTTCTTTTGGCTTATCATTTGTTTCCCTTTCCACATCGCCTTTTTAGCCTCAACGTTCTACCAGGTTTTGATGCTGACTGACTTAGAAGCCGATTTTATCAACCCATATGATGCTTCATCAAGGATTAATTACTTCATCGTTCCTGAGTTTATTGGGCAGGGATTGTTGTGCGCTTTCTGCCTTTTAACAGGTCACTGGATCATGTTTTTGATGACGGTTCCTGTTACATGCTACCATGTGATGCTGTACATGAAACAGCAGCATCTCATCGATGTTACTGAAGTGTTTAGAGCACTTAACTCTGAGAAGAAATTTCGCTTGGCCAAACTTGCGTATTACTTAACAATCATCATTATAACTGTCTTCAGGCTTGTATTGATGCTTGTCTACTATTTAGATTCTGAAGATGAGTGA 429 0.3963 MGLELFFWLIICFPFHIAFLASTFYQVLMLTDLEADFINPYDASSRINYFIVPEFIGQGLLCAFCLLTGHWIMFLMTVPVTCYHVMLYMKQQHLIDVTEVFRALNSEKKFRLAKLAYYLTIIIITVFRLVLMLVYYLDSEDE* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0230 142 Pfam Cornichon protein 7 127 IPR003377 GO:0016192
Vra3g0230 142 PANTHER CORNICHON-RELATED 3 132 - -
Vra3g0230 142 PANTHER PROTEIN CORNICHON 3 132 - -
Vra3g0230 142 SMART Cornichon_2 6 127 IPR003377 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0230 Vra-Chr3 2579161 2584281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0230 K20368 - gmx:100527262 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0230 3 2579161 2584281 Vra3g0230 3 2579161 2584281 ECH
Vra3g0230 3 2579161 2584281 Vra8g0259 8 3294650 3299609 PCT