Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0209 ATGGCAGTGATAGAAGAAAAAGGCCCTGCAAATGGGAACGAAGATTACACTCAAGATGGCACAGTAGACCTAAAGGGTAGACCCGTTTTGAGAACAGAGACGGGAAAATGGAAAGCTTGTTCCTTTATAGTTGGGTATGAAGTGTTTGAGAGGATGGCTTTCTACGGGATACAATCAAACCTAGTGATATATCTAACAAGGAAGCTCCATGAAGGCACTGTGAAATCTTCGAACGATGTTAGCAACTGGGTGGGTTCAGTGTGGATGATGCCACTGGCAGGAGCTTACATAGCAGATGCTTATCTTGGCAGATATAAAACTTTTATAATTGCCTCGTGTATTTATGTTGTGGGAATGTGTCTGTTGACACTGGCAGTTTCAGTACCAGCACTGAGGCCACCACAATGTGATGAAGGCGAGAATTGCCCAGAGGCATCGTCATTGCAATATGGTGTTTTCTTCTTGGCCCTTTATATCATTGCAGTAGGCACAGGAGGGACGAAGCCTAACATTTCGACCATGGGAGCAGACCAATTTGACGAGTTTGAACCCAAAGAGAGAAGATATAAGCTCTCCTTCTTCAATTGGTGGTTTTTTAGCATTTTCTTTGGCACCCTTTTCGCCAACACTTTCTTGGTTTTCATACAAGAACGTGTGGGTTGGACCATTGGATATGGCCTTCCCACCCTTGGCCTTGCTGTTTCAGTATTGGTGTTTCTGGGAGGAACTCCATTTTACAGACACAAACTGCCTTCAGGTAGCCCAATAACAAGGATGCTTCAGGTCTATGTTGCTGCTGTGAAAAAGTGGAAGCTACGTGTCCCAGATGATCCAAAAGAGCTACATGAACTGAGCATTGAACAGTATGCAAGTAGTGGGAGAAACAGAATTGATCGGAGCTCTTCATTGAGTTTTCTTGACAAGGCCTCTATAAAGAATGGTCAAACATCATCATGGAGACTTTGTACTGTGACACAAGTAGAGGAAACCAAGCAAATGACAAAACTGATTCCTGTTTTGCTGACAACGATTATCCCAAGCACCTTGATAGTTCAAGCGAGCACTCTCTTTGTCAAACAAGGCACCACTCTAGACAGGAGAATGGGACCCCATTTTCATATTCCCCCGGCATGCCTAAATGCATTTGTAACTATCGCCATGCTGATAACCGTTGTTCTATATGACCGTGTTTTTGTTCCTGTAATTCGGCGCTACACAAAGAACCCAAGGGGGATCACAATGCTGCAGAGACTTGGTATTGGGCTTGTGCTACATTGCATCATAATGGTGATTGCATGCTTTATTGAAAGAAAGAGACTGAGGGTGGCAAGAGAAAACCACCTCTTTCACGCGAAAGATACGATTCCTCTCACTATTTTCATTCTACTCCCTCAGTATGCTTTGGGAGGGGTTGCTGATAACTTTGTGGAAGTAGCCAAGATGGAGTTATTCTATGATCAAGCACCAGATGGCATGAAAAGTCTCGCAACATCATATTTCACAACCACCATAGGTATCGGAAGCTTTCTCAGCAGTTTTCTTCTGTCAACTGTTGCTGATATCACAAAGAGAAATGGCCACAGAGGTTGGATTTTGGACAATCTAAACATCTCCCGTTTAGATTACTATTATGCATTCATGGCCGTACTCAGCTTCCTCAACTTGCTCTGCTTTTTGGTTGTTGCCAAGTTCTTTGTCTATAATGTCGATGTAACACAAACCAAACCGAGCTTCGAGATGAACTCTGCATCGCCGCAGCCACAGAACAGTACTGGAGTAAACCAAAGTACCCCACAAACAGATGGCAAATTCTAG 1815 0.4369 MAVIEEKGPANGNEDYTQDGTVDLKGRPVLRTETGKWKACSFIVGYEVFERMAFYGIQSNLVIYLTRKLHEGTVKSSNDVSNWVGSVWMMPLAGAYIADAYLGRYKTFIIASCIYVVGMCLLTLAVSVPALRPPQCDEGENCPEASSLQYGVFFLALYIIAVGTGGTKPNISTMGADQFDEFEPKERRYKLSFFNWWFFSIFFGTLFANTFLVFIQERVGWTIGYGLPTLGLAVSVLVFLGGTPFYRHKLPSGSPITRMLQVYVAAVKKWKLRVPDDPKELHELSIEQYASSGRNRIDRSSSLSFLDKASIKNGQTSSWRLCTVTQVEETKQMTKLIPVLLTTIIPSTLIVQASTLFVKQGTTLDRRMGPHFHIPPACLNAFVTIAMLITVVLYDRVFVPVIRRYTKNPRGITMLQRLGIGLVLHCIIMVIACFIERKRLRVARENHLFHAKDTIPLTIFILLPQYALGGVADNFVEVAKMELFYDQAPDGMKSLATSYFTTTIGIGSFLSSFLLSTVADITKRNGHRGWILDNLNISRLDYYYAFMAVLSFLNLLCFLVVAKFFVYNVDVTQTKPSFEMNSASPQPQNSTGVNQSTPQTDGKF* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0209 604 Gene3D MFS general substrate transporter like domains 9 573 IPR036259 -
Vra3g0209 604 MobiDBLite consensus disorder prediction 580 604 - -
Vra3g0209 604 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 578 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra3g0209 604 PANTHER PROTEIN NRT1/ PTR FAMILY 5.2-LIKE 19 578 - -
Vra3g0209 604 CDD MFS_NPF5 37 567 IPR044739 GO:0042937|GO:0042938|GO:0071916
Vra3g0209 604 SUPERFAMILY MFS general substrate transporter 34 562 IPR036259 -
Vra3g0209 604 Pfam POT family 105 531 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0209 Vra-Chr3 2408414 2410661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0209 4 574 Organic Solute Cotransporters AT5G46040 59.930 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0209 - - gmx:100807002 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0209 3 2408414 2410661 Vra3g0209 3 2408414 2410661 ECH
Vra3g0209 3 2408414 2410661 Vra8g0067 8 728679 733763 PCT