Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0143 ATGGTTGCAAATTGTTTTAGGCTGAACAAGAGTTCAGCACTGTGTTCAACTCATTGGAACCACACCAAACGTAAACTAGAACACCCTTGTGCCGTTGCAATGCTCAGAAGACCTTCAGAGAGCATTACAGAAGAAACAAGAAAAACTAATGCCTACAACGATAACTTGTTTGATCGTTTAGCAATAAACCATCTTTCAAAAAGCGTTCAAGAAGCCACAGGACTCAGCAACAACAAGAGTGGATATGAGAGCTTGGTCGAAGCAGCTACTGTGGCTAAACACAAATTTGACCCTATTGAGCAGCAAGAGGTCATCATCCAAGCTTTGGACAGAGCCTTCCCCAGGCCAATACTTTCATTCATAAAGACAGTGCTACCACCAACATCTAAACTCTCACGGGAATATTTTGCCGTTTTCACCACTTTGTTCTTTGCCTGGTTAGTCGGACCTTGCAAGGTGAGGGAGTCGAAAGTCAACGGCAGAAGTGAAAAAAATGTAGTCTACATCCCAAAATGCAGGTTTTTAGAGGAGACAAGTTGTGTAGGCATGTGTATCAATCTCTGCAAAATGCCATCTCAAACTTTTATAAAGGACTCTCTGGGAATGTCAGTCAACATGGTACCCAATTTTGATGACATGAGTTGTGAGATGATATTTGGAGAGGATCCTCCAGGATCAAGTGATGATCCAGCACTGAAGCAACCATGCTATAAACTATGCAAGGCATATAAAAATCATGGAACCAACTGCCTCAGTTAA 759 0.4203 MVANCFRLNKSSALCSTHWNHTKRKLEHPCAVAMLRRPSESITEETRKTNAYNDNLFDRLAINHLSKSVQEATGLSNNKSGYESLVEAATVAKHKFDPIEQQEVIIQALDRAFPRPILSFIKTVLPPTSKLSREYFAVFTTLFFAWLVGPCKVRESKVNGRSEKNVVYIPKCRFLEETSCVGMCINLCKMPSQTFIKDSLGMSVNMVPNFDDMSCEMIFGEDPPGSSDDPALKQPCYKLCKAYKNHGTNCLS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0143 252 Pfam Beta-carotene isomerase D27-like, C-terminal 146 225 IPR025114 GO:0005506
Vra3g0143 252 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 16 249 - -
Vra3g0143 252 PANTHER BETA-CAROTENE ISOMERASE D27 16 249 IPR038938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0143 Vra-Chr3 1630948 1637009 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0143 K17911 - gmx:100813404 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0143 3 1630948 1637009 Vra8g1092 8 25367382 25374845 PCT