Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0133 ATGGAGCCAAAGTGCACCATAAACTGTCGCCGCTCGGAGTTCGCTCCGACCCCTCTGCCGGAGAGTCCTCGAGTGCCCATGGAGTTTCTGTCACGCTCATGGAGTGCCTCTGCTCTTGAGGTTTCCAAAGCTCTTTCACATCACCACTCCTCTCTCTCCTCTTCTTGCATGCCTAATTCAAACAACACTTCCATTCCGGAGGAAACTCTTCCCAACAACACCAACGCCAACGCCTTTCTCTCTGAAGATTTCTCCACCATGTCTAAGAATCAGTTCTCTTTTGCTTCCTCTGCCACCTCTCAGCTTGTCCTTGAACGCATTATGTCACAATCCACAAGAGAGGAAGTGTCTCCGTTAACATCGGGTAGGTTATCTCACAGCAGCGAGCCTTTGAATGGCGGTGGTTCCTTAACCGGAACAGATAGCCCTCCGATTTCACCTTCGGATGAGTTTGATGACGTTGTTAAGTTCTTTCGGGCAAATAATTCAATTCACCCTTTGTTCAATGGTGGACGAGCCAGTGCAACTATTGGCAACGGCACAGCATGCTCGGGACCAAAAACTGTTGGAAGATGGTTAAAGGACCGAAGAGAGAAGAAGAAAGAAGAAAACAGAACCCATACTGCTCAGCTGCATGCCACTATTTCAGTGGCTGCAGTGGCTGCTGCCGTTGCAGCTATTGCGGCTGCAACAGCAGGCTCGTCTGCTCCCAGCAAGGATGAGAAGATGGCAAAGACTGACATGGCTGTTGCTTCTGCAGCTACATTAGTTGCTGCACAGTGTGTAGAGGCTGCAGAAGCTATGGGGGCCGAGCGTGACCACCTTGCTTCTGTCATCAGCTCTGCTGTGAATGTCCGTTCCCATGATGATATTACTACTCTTACAGCTGCAGCTGCCACAGCTCTACGAGGAGCAGCAACCTTGAAAGCAAGAGCTTTGAAGGAGGTATGGAATATAGCCACAGTTACGCCACTGGAGAGAGGCATAGGGGGGATTGGACTATGTGGTAAAAGTATTAACAGCAATACTAGCAACACCAGCACCAGTGATAGCGGGGAAGTTTTCAATGGAGAAAATTTTCTAGGTGCCTGCAGCCAAGAGCTTATTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGGTGATCTTCACTGGAAAATAGTGTCTGTCTATATACATCGAACCGGCCAGGTAATGCTGAAAATGAAGAGCAGACATGTGGCAGGAACAATTACCAAAAAGAAAAAGAATGTTGTGTTAGATATCTGCACGGATTTACCAGCATGGCCAGGGAGACATCTGTTTGATGATGGTGAAAAGCGACGCTACTTTGGATTGAAGACCGACCAAAGGGGGATTGTGGAGTTTGAGTGTCGAAATCAAAGAGAATATGACATCTGGACACAAGGGGTTTCGAGACTACTCTCCATTGTAGCACAGAGGCAAAACAGATATGGGAATTAA 1467 0.4813 MEPKCTINCRRSEFAPTPLPESPRVPMEFLSRSWSASALEVSKALSHHHSSLSSSCMPNSNNTSIPEETLPNNTNANAFLSEDFSTMSKNQFSFASSATSQLVLERIMSQSTREEVSPLTSGRLSHSSEPLNGGGSLTGTDSPPISPSDEFDDVVKFFRANNSIHPLFNGGRASATIGNGTACSGPKTVGRWLKDRREKKKEENRTHTAQLHATISVAAVAAAVAAIAAATAGSSAPSKDEKMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVISSAVNVRSHDDITTLTAAAATALRGAATLKARALKEVWNIATVTPLERGIGGIGLCGKSINSNTSNTSTSDSGEVFNGENFLGACSQELIAKGSELLKRTRKGDLHWKIVSVYIHRTGQVMLKMKSRHVAGTITKKKKNVVLDICTDLPAWPGRHLFDDGEKRRYFGLKTDQRGIVEFECRNQREYDIWTQGVSRLLSIVAQRQNRYGN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0133 488 Pfam Auxin canalisation 20 327 IPR008546 -
Vra3g0133 488 Pfam Plant pleckstrin homology-like region 374 479 IPR013666 -
Vra3g0133 488 MobiDBLite consensus disorder prediction 112 145 - -
Vra3g0133 488 PANTHER AUXIN CANALIZATION PROTEIN 1 488 - -
Vra3g0133 488 MobiDBLite consensus disorder prediction 112 149 - -
Vra3g0133 488 PANTHER EXPRESSED PROTEIN 1 488 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0133 Vra-Chr3 1509818 1514710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0133 - - gmx:100805743 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0133 3 1509818 1514710 Vra3g0133 3 1509818 1514710 ECH
Vra3g0133 3 1509818 1514710 Vra8g1109 8 25763514 25767280 PCT