Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0085 ATGCCGCCTAGTCGGAGAAAGAGCGGAAAAAAGGCGGCGGCGGCTGCCGCCGCTTGCAGTCGGTTTAAGGTCGGCGATCTCGTGCTTGCTAAGGTTAAGGGGTTCCCTGTTTGGCCTGCGAAGGTGGATGAGCCGCGGAAGTGGGGTTACTCTGCTGATCGGAAGAAAGTATTTGTTTACTTCTTTGGAACCCAACAAATAGCATTCTGTAATCCTACCGATGTAGAAGCATTTACTGAAGATAAGAAACAATCTCTTGCCAAACGTCCAGGAAGGGGTGCTGATTTCGCACGTGCGGTAAAGGAGATTATTGAAAGTTATGAAAAATTGAAGAGTGATAATCTAGATGATGACACTAGTTCTGATGGTGAAGTTGCCATTGCAAATTTATCAAATCCACTTGATCCATCTGCAAACCTATGGTCAAAGGATGAGATCAAGGCTCCTTTGGCAATTGATTCACAAAAGGAATCTTCAAATTGTGTGATTGGCATACCTGAGGTAGTTTGTGCAGCTGAGGATGCTGTTGAATTGAGGAATGAGTCGGATAATGTAGAGGCATCATTGGATGAACCTACTGATAATGCTACTGTGACTGCAACTGTAAAATCACCTTTTCCAATTACCCTGAGAAATGAACCAGCTCGAAGGATTAGAAGCACATTACAGGTCCAAGCCTTTGTTGTACCTTGTAATGATGGTGAAAATATCGGTGATGGTAATAGTGATGACTATGTATTAGCTGATGCAATTCTGAATATGGATATACGAAGGTGTAAACATACCAGGAAATCTCCTAATATCTTAGGTTGCGATGATACTGATTCACTTGCATTTGCCTCAAATCTTAGCATGGAGGATAATGGTTCTGAAATTATTACTATAAATTCTGATGCCTTTACTTTAAATGAGGGGAGTAGAATAGATTGTAATTTAAAACTTGAACAGTCTGAGCCTTTTGAGTGCCCTGAAGGTGAAGATGATTTGAACAAAGGTCTTGATCTAGAAATAAAGACTATAATCAGCAAGAAGAAAAGAAGACCAAATAGGAAGAAAGAAACTAATGATGCTGGTGCACTGAATGCCAGTCAAACTTTGCTGAATATGAGTGAAAATTCAAAAGAGAGATGCCCAGACCAAGATGGAGATGAACACTTGCCCTTGGTGAAACGAGCCAGAGTTAGAATGAATAAATCATCAACAGAGGCAGAACACAATAGCACTATAGAAGTCCAGGTGAAGAGTGGCGACGAAGATATTACTGACTCACCACATCAGCTAACCACATCCTCAAATTGTGAAAATGGTAGCCATACTGAAGTAGGCTCATTAGTCTTGAAAGAAGCTTTGGTTAATATTTCTCCTTCCAACTTAAAAGCTCCATGTTCAGAAAATGGTTCTCATATTTGTAAAATTAAGAAAGACCAAATGATTGGCTTTTCTGTAAATGATGAAGCTGCTCTGCCTCCATCTAAACGTATCCATCGTGCTTTGGAAGCAATGTCTGCCAATGCTGCTGAAGATGGTAAAGCCTGCATGGAATCATCATCCTCTATAGTGGCATCAACTGGTAGGTGCTGTATATCTACTATCAAGAAATGTCCTTGTATGACTGATAATAATGAAGGAGGTAACGATTTAGACCTTCAAAGGTTGGATTCTTGTGGCATTGATTCTTCTCATGTTAGTGTATGTAGTTTCTCAGCTCGTTCAAATACAATTATTTCCATAGAGAATGAGTCATCTATAGAAGTGGATGAGCAGTTGGCCAAGTACGACAATGAAATCGGGAAGGATGCCATCCCTGGTGATAGACAGCAAGTTGGTGAAGATCTTAGTGATTCTGTTGTTTGTTTTCCTTCCAAAATAGTTTCTCAAATTCACTTACATGGCAAAATTTCTCCTAATCCTGATATGAAATATTGCCAAGTTGGGAGCAATCAAGATTCACCAGTTCCATCCTTGTTACCAAATTGTGATGGCAACATCAGGCCTTTGAACCATTCAGATGCATCAGATACATTAGAGCATGACGGAATAAGTCTTGATCCTGTGTTTGGGGCCAGTGAAAGTGATAAATTATTACCTCAAAACGGAATTAACGTGCCCCAGAATGTGGTGGTTGTTTGTGAGGATGTGAAGCAAGTAGTTGGTGACAGCAAAAAAATTAATGACACGCATGAGGTTGTTAAAGAAGTGAAATTTAAAGGACAAGAGGAGGATATGAATTCTGTTTCAATATCAAATGATTATTCAGGTGAAAAGGGTAATTTAGGGATTGTGTCAAGCCCATCTTTGACTGATGGCAGAGTCTGCCTTCCACCTGGTTCACCTCCAAACACAACATCAGTCTGCAATATTTCTACATCAGACAGTAGTAATATCCTTCAAAATGGAAGTTGTAGCCCTGATGTACACCAAAAAAACACTTTATCGGGTCCTACTGATGGATGGAAAGATGGGATTGTGGCAAATGAACGATCAAGATCTGTGGGCAAGTCAACTGAAGCAGGAGATGCCGCTTTGTTGTACTTTGAAGCAATGCTTGGGACATTGACAAGGACAAAGGAAAGTATTGGTCGAGCAACACGCATTGCTATTGACTGTGCAAAGTTTGGCATTGCAACTAAGGTGGTTGAAATTCTTGTTCGTAATCTGGAAATTGAGACGAGCCTGCATCGGAGGGTGGATCTGTTTTTTCTTGTTGATTCTATTGCTCAATGTTCTCGAGGGTTGAAAGGAGACATTGGTGGAATGTATCCATCCGTCATGAAAGCAGTGCTGCCACGTCTATTGTCTGCAGTTGCACCTCCTGGAAATGCTGCAAAAGAAAATCGTCGTCAGTGTCTTAAGGTATTAAGGCTATGGTTGGAGAGAAAAATCCTTCCAGAACCCATTATTCGGCATCATATGCGGGAAATAGACTCATATAGCACTTCAGCTTCTGCAGGTGTGTTCTCACGCCGTTCATTAAGAAGAGACAGGCCTTTTGATGACCCTGTCAGAGACATGGAGGGCATGCTTGATGAATATGGAAGCAACTCAAGTTTTCAGCTACCTGGATTTTGCATGCCCCGAATGCTTGAAGACGGAGGAAGTGATTCTGATGGAGGGGAGTTTGAGGCTGTTACTCCTGAGCATGATTCTGAAACACATGAAGTGCAAGAAATGGCTCATGCAATTGAAAAACGGAGGCATGTGTTGGAAGATGTCGATGGTGAGCTAGAAATGGAAGATGTGGCTCCCTCTGTTGATATTGAATTAAATTCAATTTGTAATGTTGATAGAGTAAATGTCCCAGAGTTTGAGAAGAATCTTACGTCATTTGCTCCTCTTTTGCCACAAGATGTGCAACCATCATCCCCACCACCACCTTCATCTCCACCACCACCACCACCACCACCTCCTTCTCCTCCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTTCCTCTACCTGCACCCCCATCTACTGCACAGCTCACATCAGCTACCTCTGATCAATTTCATGTTGCGGTTGATTCAAAAGGTTTTGAAGATTCACTGACCGTGAAAGTCAATGCACTGCATCCTATGGCTCAGCCCTTTGTTGAACCAAGAAATGGTCAACCTGCCAGTGAGGCAATGCAGTATACTGTCCATGAATGTAGAGACAAGCCAATGCAGATGCAGGCGTCTACTTGCTCTTTCAACACTCTCCCTATACAATCAACCGAAATTTCCAGGAACGCTGATGGTGGTACTATGCATAATAAATGTTACTCGATACCTCCACCTCACCATGTGCCATCTAATCAGTTTTCTTTTGTTCATGGGGAACATCGTATGAAGTCTCAAAGGGAGGTTCTGCCACCCCTTCCCTATTCCAATGATTACCACTTTGTTCCCAGTATGAAGAGAGAATTTGGTTATGAAAATCATGAGAGATTAAAACCTCCTTCATGTGATTACCAAGAGATATGGAATGTTCCTCCTTCTTATGGTCCGTGGTATCATGATAGAGGTGTGACTGCTCCTTATGGTTGTCATCCAAGTGAACCTGCCTGTTTTCCGGGTCATGGATGGAGATTTCCTCCCCCAGCACTGAATTACAGGGACTCCTTGCCTTTTAGACCTCACTATGAAGATGCAATTCCAGTAGCAAACCGAGGCCCAAGTTTTTGGCAGCCCAGGTGA 4179 0.4231 MPPSRRKSGKKAAAAAAACSRFKVGDLVLAKVKGFPVWPAKVDEPRKWGYSADRKKVFVYFFGTQQIAFCNPTDVEAFTEDKKQSLAKRPGRGADFARAVKEIIESYEKLKSDNLDDDTSSDGEVAIANLSNPLDPSANLWSKDEIKAPLAIDSQKESSNCVIGIPEVVCAAEDAVELRNESDNVEASLDEPTDNATVTATVKSPFPITLRNEPARRIRSTLQVQAFVVPCNDGENIGDGNSDDYVLADAILNMDIRRCKHTRKSPNILGCDDTDSLAFASNLSMEDNGSEIITINSDAFTLNEGSRIDCNLKLEQSEPFECPEGEDDLNKGLDLEIKTIISKKKRRPNRKKETNDAGALNASQTLLNMSENSKERCPDQDGDEHLPLVKRARVRMNKSSTEAEHNSTIEVQVKSGDEDITDSPHQLTTSSNCENGSHTEVGSLVLKEALVNISPSNLKAPCSENGSHICKIKKDQMIGFSVNDEAALPPSKRIHRALEAMSANAAEDGKACMESSSSIVASTGRCCISTIKKCPCMTDNNEGGNDLDLQRLDSCGIDSSHVSVCSFSARSNTIISIENESSIEVDEQLAKYDNEIGKDAIPGDRQQVGEDLSDSVVCFPSKIVSQIHLHGKISPNPDMKYCQVGSNQDSPVPSLLPNCDGNIRPLNHSDASDTLEHDGISLDPVFGASESDKLLPQNGINVPQNVVVVCEDVKQVVGDSKKINDTHEVVKEVKFKGQEEDMNSVSISNDYSGEKGNLGIVSSPSLTDGRVCLPPGSPPNTTSVCNISTSDSSNILQNGSCSPDVHQKNTLSGPTDGWKDGIVANERSRSVGKSTEAGDAALLYFEAMLGTLTRTKESIGRATRIAIDCAKFGIATKVVEILVRNLEIETSLHRRVDLFFLVDSIAQCSRGLKGDIGGMYPSVMKAVLPRLLSAVAPPGNAAKENRRQCLKVLRLWLERKILPEPIIRHHMREIDSYSTSASAGVFSRRSLRRDRPFDDPVRDMEGMLDEYGSNSSFQLPGFCMPRMLEDGGSDSDGGEFEAVTPEHDSETHEVQEMAHAIEKRRHVLEDVDGELEMEDVAPSVDIELNSICNVDRVNVPEFEKNLTSFAPLLPQDVQPSSPPPPSSPPPPPPPPPSPPPPPPPPPPPPPVPLPAPPSTAQLTSATSDQFHVAVDSKGFEDSLTVKVNALHPMAQPFVEPRNGQPASEAMQYTVHECRDKPMQMQASTCSFNTLPIQSTEISRNADGGTMHNKCYSIPPPHHVPSNQFSFVHGEHRMKSQREVLPPLPYSNDYHFVPSMKREFGYENHERLKPPSCDYQEIWNVPPSYGPWYHDRGVTAPYGCHPSEPACFPGHGWRFPPPALNYRDSLPFRPHYEDAIPVANRGPSFWQPR* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0085 1392 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1392 - -
Vra3g0085 1392 CDD HDGF_related 21 106 IPR035496 -
Vra3g0085 1392 Pfam PWWP domain 25 107 IPR000313 -
Vra3g0085 1392 PANTHER PWWP DOMAIN PROTEIN 1 1392 - -
Vra3g0085 1392 Pfam CID domain 845 967 IPR006569 -
Vra3g0085 1392 SMART PWWP_4 22 79 IPR000313 -
Vra3g0085 1392 MobiDBLite consensus disorder prediction 422 436 - -
Vra3g0085 1392 MobiDBLite consensus disorder prediction 1112 1165 - -
Vra3g0085 1392 SMART 558neu5 844 975 IPR006569 -
Vra3g0085 1392 ProSiteProfiles PWWP domain profile. 24 81 IPR000313 -
Vra3g0085 1392 MobiDBLite consensus disorder prediction 343 364 - -
Vra3g0085 1392 MobiDBLite consensus disorder prediction 417 436 - -
Vra3g0085 1392 Gene3D - 843 982 IPR008942 -
Vra3g0085 1392 SUPERFAMILY Tudor/PWWP/MBT 20 122 - -
Vra3g0085 1392 Gene3D - 3 108 - -
Vra3g0085 1392 ProSiteProfiles CID domain profile. 837 978 IPR006569 -
Vra3g0085 1392 MobiDBLite consensus disorder prediction 1116 1157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0085 Vra-Chr3 908337 921454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0085 - - pvu:PHAVU_001G148900g 2215.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0085 3 908337 921454 Vra3g0085 3 908337 921454 ECH
Vra3g0085 3 908337 921454 Vra8g1163 8 26626986 26643343 PCT