Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra3g0075 | ATGAATTTCTTCGCATCCGTTTTCTCCGACTCCGACAATGCGCACCAAAACGAATCGCAAGAGGAAGCCAATAGCGATTCCTCGTCGCCGGAGTGCCGTTCCGATTCCACCGGCGCCGGTGCATGGGAAATCGGCGATCTGTGGAAAAGGCTGAGCGCGAAATCTGAATTGATCATTGAGACCTACCGTCGCGACTTGCAGGAATTCGGTACCGGCTTGAAGAAGGAGATTGAGGTGGCTCAGGGTTCTCTAGAGACGGTGGGCCACGTCATCGACCAGTTCGGGAACACCGTCGCGAAAGGCACTGCTCACTTTATATCTCACGGCAAGGACGCCATCCCCGTCGATTCCGGGTCCGATAGTAATGTTAATACCAAAAGCAAGACGGAAAAAAAGAGCTTCAATTCGAGGCGCTACAGTAGGTTTGAGGCTCAGGTTCGGATCATTCAGGGTGACGTTAGTACTTACACCGAAGTGCCTGAGGATTTAGATGGGTATGAGAAGTGGAAATCGGGGTTTTCCTTGGAAGGGAAGAGCGAGGAAATGGAAGAGTTGCTGAGAGAGAATGAGGGTATGGAGAGTGTTTACAAGAGGATTGTGCCTAATGTTGTTGACCGTGATACGTTTTGGTTTAGGTATTATTATAGAGTTTATAGGTTTAAAAAAGCTGAGGATATGAGGGCGAGGCTCGTGAGGAGAATGTCGAGGGAGGAGGAGGAGTTGAGCTGGGATGTTGAAGATGATGATGAGGAGGAGGAGGAGGAGGAGAATAGTGACGAACATAATAAGCGGAAAGAAGGAAATTCTAATGGAACAGGGAGATCGAACGTGGAGCAGATGTATAAGTCTTGTGAGGAGGGTTCTAAGGAAGGAAAGAGTGGTGATTTATTGCATAGCAGGGGAACGGGTGATAAGAAGGATGAGTCTGTTGAAGAATCAAAGGTTGAGAGTAGTAGCAAGGAAATGGGTGATGGGAGCAAGAAAAAAGAGGACGCAGTGGTTGACACTGGTAACATGAATGATTCTGATAAGAAAGTGGTCATGGAACAGAAAATTGATAATGGAAAAGATTCATCGGTGGCAAATACGCACTCTGGGAATGAGAATGAGGAGAAGAAGGAGGAGGACCTTGAGTGGGATGAGATTGAGGATCTTAGTGGAATTGATGAAGAGAAGGCAATTCAAACAGGGAGCCCAACCAACGTTGATTTGCGGAAGCGCCTCAGTACTGCACAACAACAACAAGACTTGAGTTGGGATATTGAAGATGATGATAATGATAAGCCTGCTAATGCTAAGGTTTGA | 1305 | 0.4705 | MNFFASVFSDSDNAHQNESQEEANSDSSSPECRSDSTGAGAWEIGDLWKRLSAKSELIIETYRRDLQEFGTGLKKEIEVAQGSLETVGHVIDQFGNTVAKGTAHFISHGKDAIPVDSGSDSNVNTKSKTEKKSFNSRRYSRFEAQVRIIQGDVSTYTEVPEDLDGYEKWKSGFSLEGKSEEMEELLRENEGMESVYKRIVPNVVDRDTFWFRYYYRVYRFKKAEDMRARLVRRMSREEEELSWDVEDDDEEEEEEENSDEHNKRKEGNSNGTGRSNVEQMYKSCEEGSKEGKSGDLLHSRGTGDKKDESVEESKVESSSKEMGDGSKKKEDAVVDTGNMNDSDKKVVMEQKIDNGKDSSVANTHSGNENEEKKEEDLEWDEIEDLSGIDEEKAIQTGSPTNVDLRKRLSTAQQQQDLSWDIEDDDNDKPANAKV* | 435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 241 | 257 | - | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Vra3g0075 | 434 | Pfam | BSD domain | 169 | 225 | IPR005607 | - | |
| Vra3g0075 | 434 | Gene3D | BSD domain | 131 | 231 | IPR035925 | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 283 | 352 | - | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Vra3g0075 | 434 | Coils | Coil | 175 | 195 | - | - | |
| Vra3g0075 | 434 | SUPERFAMILY | BSD domain-like | 139 | 227 | IPR035925 | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 237 | 434 | - | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 393 | 417 | - | - | |
| Vra3g0075 | 434 | PANTHER | PROTEIN, PUTATIVE-RELATED | 1 | 79 | - | - | |
| Vra3g0075 | 434 | PANTHER | PROTEIN, PUTATIVE-RELATED | 79 | 425 | - | - | |
| Vra3g0075 | 434 | Coils | Coil | 220 | 240 | - | - | |
| Vra3g0075 | 434 | MobiDBLite | consensus disorder prediction | 373 | 387 | - | - | |
| Vra3g0075 | 434 | ProSiteProfiles | BSD domain profile. | 169 | 221 | IPR005607 | - | |
| Vra3g0075 | 434 | SMART | wurzfinal6 | 169 | 221 | IPR005607 | - | |
| Vra3g0075 | 434 | PANTHER | SYNAPSE-ASSOCIATED PROTEIN | 79 | 425 | - | - | |
| Vra3g0075 | 434 | PANTHER | SYNAPSE-ASSOCIATED PROTEIN | 1 | 79 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra3g0075 | Vra-Chr3 | 803354 | 805027 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra3g0075 | - | - | pvu:PHAVU_001G147700g | 606.675 |
Event-related genes