Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0070 ATGGAGTTCAAAGTTGTGGAGGAAGGCGTGCAGAAAGGAATCAGAGAGCCACTGGTGGAGAAACCGGACCATCAGTTGGTCCATGCAAGCAAAGGGCATCCATGGATGCTTTATTTTTGTACATTCGTTGCAGTGTGTGGTTCTTATGAGTTTGGTACTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTCAACCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCAATCTTGACTTTTGGTGCGATGGTTGGCGCAATAACAAGTGGGCCTATTGCTGATTTCCTTGGACGAAAAGGAGCAATGAGAGTGTCAAGTGCATTCTGTGTCGGGGGCTGGCTTGCTATTTACTTTTCTCAGGGTCCAGTGCCTCTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTATAGCAGAAATAGCACCTAAAGAACTCCGAGGGACACTGACTACCTTAAATCAGTTCATGGTCGTTGCTGCTGTGTCAGTGGCATTCACCATTGGAAATGTACTTTCGTGGAGAGCTTTAGCTTTGACTGGCCTAATTCCCACTTCTGTATTGCTACTGGGTCTGTTTATAATTCCAGAGTCTCCGAGATGGCTAGCGAAGAGAGGACGTCAAAAAGATTTTGAGGCAGCACTGCAAATACTTCGTGGCAAAGATGCTGATATATCAGAGGAGGCAGAGGAAGTTCAGGAATACATAACTGCTTTGGAGCAGCTCCCAAAATCTAGGCTACTGGAATTGTTTCACAGAAGATATTTGCGCTCAGTCACTATAGGAATAGGCCTAATGGTCTGCCAGCAGTTTGGAGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCCGCCATCGGAACTATATCATATGCTTGCCTTCAGGTTGTTGTCACAGGTCTTGGAGCTGTCTTAATCGATAAAACTGGGAGGAAGCCCCTACTTCTATTATCCGGAACGGGATTGGTTGCAGGGTGTGCATTTTTAGCAGTTGCATTCTATCTCAAGGTCTACGAGGTGGGTGTTGCAGCTGTTCCAGCACTTGCATTAATAGGCATACTGGTCTACATAGGATCATTCTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCTGTCAATATTAAAGGGCAAGCTGGAAGTTTGGCGACATTAACGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGTTCTTATGGTACCTTCATTCTTTATGCAGCAATTAATGCATTGGCTATATCATTTATAATTTTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGCAATTAACTCATAA 1419 0.4405 MEFKVVEEGVQKGIREPLVEKPDHQLVHASKGHPWMLYFCTFVAVCGSYEFGTCAGYSSPTQDAIRKDFNLSLAEYSLFGSILTFGAMVGAITSGPIADFLGRKGAMRVSSAFCVGGWLAIYFSQGPVPLDIGRLATGYGMGVFSYVVPVFIAEIAPKELRGTLTTLNQFMVVAAVSVAFTIGNVLSWRALALTGLIPTSVLLLGLFIIPESPRWLAKRGRQKDFEAALQILRGKDADISEEAEEVQEYITALEQLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPAIGTISYACLQVVVTGLGAVLIDKTGRKPLLLLSGTGLVAGCAFLAVAFYLKVYEVGVAAVPALALIGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSLATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAISFIIFAVPETKGKSLEQLQAAINS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0070 472 Pfam Sugar (and other) transporter 48 468 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra3g0070 472 SUPERFAMILY MFS general substrate transporter 33 466 IPR036259 -
Vra3g0070 472 ProSitePatterns Sugar transport proteins signature 1. 94 111 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra3g0070 472 CDD MFS_GLUT6_8_Class3_like 38 465 IPR044775 GO:0008643|GO:0051119
Vra3g0070 472 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 459 IPR020846 GO:0022857
Vra3g0070 472 PANTHER SUGAR TRANSPORTER ERD6-LIKE 7 33 471 - -
Vra3g0070 472 Gene3D MFS general substrate transporter like domains 30 472 IPR036259 -
Vra3g0070 472 PANTHER - 33 471 - -
Vra3g0070 472 TIGRFAM SP: MFS transporter, sugar porter (SP) family 35 465 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0070 472 PRINTS Sugar transporter signature 131 150 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0070 472 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0070 472 PRINTS Sugar transporter signature 372 393 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra3g0070 472 PRINTS Sugar transporter signature 395 407 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0070 Vra-Chr3 777953 782046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0070 2 471 Organic Solute Cotransporters AT5G18840 58.526 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0070 K03444 - gmx:100819822 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0070 3 777953 782046 Vra10g0599 10 11874349 11879469 ECH
Vra3g0070 3 777953 782046 Vra3g0070 3 777953 782046 ECH