Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0599 ATGAACCTCTCTCATATTTCCTCTGCTTCTCATAGAACGCAAAATATGGACAACAAAACCACCGAACCAAGCGATTATACAAGCCCTCTTCTCCCTACAAGTTATGGTGCCCACGATGTTGGCGTTGACTTTCTGGAAAAGAGGCACACTGGAGCTTCTTCCGTTCCAACTACTCTTATACTCACCACCCTCGTTGCTGTTTTTGGTTCCTACGTTTTTGGCTCTGCTATTGGGTACTCATCACCAACTCAATCTGGAATCATGCGTGATCTCAACCTCGGAGTGGCCCAGTACTCAATTTTTGGTTCGATATTGACTATTGGAGCTATGATTGGTGCTGTTGTTAGTGGTAGAATAGCAGATTATGCAGGTCGTCGAGTTGCCATGGGGTTCTCCCAGATTTTCTGCATCTTGGGATGGTTTGCCATAACATTCTCAAAGATTGCTTGGTGGCTTTATGTTGGAAGACTGTTGATAGGATGTGGGATTGGCCTTCTATCTTACGTGGTACCTGTTTATGTAGCAGAAATAACACCCAAGAATCTTCGAGGGGCATTCACTGGAGTTCATCAGTTAATGATTTCTTGTGGGATGTCATTAACTTATCTTATTGGAGCATATGCCAATTGGAGGATCTTGGCTCTAATAGGAATTATTCCGTGCCTTGTGCAGCTTCTCTGTCTGCCCTTCATTCCCGATTCTCCCAGGTGGCTGGCCAAGGTCGGTCGGTTAAAAGAGAGTGATTCTGCTCTACAGCACCTCAGGGGTAAGAATGCTGATGTTTATCAAGAGGCCACTGAAATTAGAGACTATACCGAAGCCTTTCAGAAGCAAACAGAAGCTAGCATCATTGGCCTATTCCGAATGCAGTATTTGAAGTCACTTATCGTAGGAGTTGGCTTGATGATACTACAACAGTTTGGAGGGATTAATGGCATTGTTTTCTATGCAAACTCTATATTTATATCTGCTGGGTTTTCAGAAAGTATTGGAACAGTAGCAATGGTCGCCGTTAAGATTCCAATGACAACTTTAGGGGTACTTCTAATGGATAAATCTGGAAGAAGACCACTTCTGCTGGTGTCTGCAGTGGGAACATGCTTAGGATGCTTTCTGGCAGCCTTGTCATTTGTCTTGCAGGACTTGCATAAATGGAAGGAAGTTAGCCCCATTATAGCCCTAGTGGGTGTACTGGTATATGTGGGATCCTACTCTATAGGCATGGGAGCAATTCCGTGGGTTATAATGTCTGAGATATTTCCCATCAACGTGAAGGGCTCTGCTGGAAGCCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTATATCATATGCTTTTAACTTCCTCATGAATTGGAGTTCAGCAGGAACTTTCTTCATGTTCTCTACCATATGTGGTTTGACTGTGTTGTTCGTAGCAAAACTCGTACCAGAGACCAAGGGACGAACACTAGAAGAAATTCAAGCTTCTATGAGTTCATACACTTCTGCAAAGAAATGA 1503 0.4351 MNLSHISSASHRTQNMDNKTTEPSDYTSPLLPTSYGAHDVGVDFLEKRHTGASSVPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSQIFCILGWFAITFSKIAWWLYVGRLLIGCGIGLLSYVVPVYVAEITPKNLRGAFTGVHQLMISCGMSLTYLIGAYANWRILALIGIIPCLVQLLCLPFIPDSPRWLAKVGRLKESDSALQHLRGKNADVYQEATEIRDYTEAFQKQTEASIIGLFRMQYLKSLIVGVGLMILQQFGGINGIVFYANSIFISAGFSESIGTVAMVAVKIPMTTLGVLLMDKSGRRPLLLVSAVGTCLGCFLAALSFVLQDLHKWKEVSPIIALVGVLVYVGSYSIGMGAIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIISYAFNFLMNWSSAGTFFMFSTICGLTVLFVAKLVPETKGRTLEEIQASMSSYTSAKK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0599 500 PANTHER - 42 495 - -
Vra10g0599 500 TIGRFAM SP: MFS transporter, sugar porter (SP) family 58 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 Pfam Sugar (and other) transporter 63 490 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vra10g0599 500 Gene3D MFS general substrate transporter like domains 51 494 IPR036259 -
Vra10g0599 500 ProSitePatterns Sugar transport proteins signature 1. 116 132 IPR005829 GO:0016021|GO:0022857|GO:0055085
Vra10g0599 500 CDD MFS_GLUT6_8_Class3_like 60 487 IPR044775 GO:0008643|GO:0051119
Vra10g0599 500 PRINTS Sugar transporter signature 70 80 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 PRINTS Sugar transporter signature 153 172 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 PRINTS Sugar transporter signature 305 315 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 PRINTS Sugar transporter signature 394 415 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 PRINTS Sugar transporter signature 417 429 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vra10g0599 500 ProSiteProfiles Major facilitator superfamily (MFS) profile. 62 481 IPR020846 GO:0022857
Vra10g0599 500 PANTHER GENERAL SUBSTRATE TRANSPORTER 42 495 - -
Vra10g0599 500 SUPERFAMILY MFS general substrate transporter 63 489 IPR036259 -
Vra10g0599 500 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0599 Vra-Chr10 11874349 11879469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0599 38 496 Organic Solute Cotransporters AT5G18840 54.095 7.85e-173 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0599 K03444 - gmx:100817150 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0070 3 777953 782046 Vra10g0599 10 11874349 11879469 ECH
Vra10g0599 10 11874349 11879469 Vra10g0599 10 11874349 11879469 ECH