Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0041 ATGGCTCGTTACGGCGAGGGCGACAAACGGTGGATCGTGGAGGACCGCCCCGACGGCACCAACGTCCACAACTGGCACTGGGCGGAGACCAACTGTCTCGAATGGTCCAGAACATTCTTTTCTTCCCTCCTCTCCAACCTCACAATTCTTGACGGCGAAGGGAATCTTTTCATCAAAACCACCTCACTCCGCTCCCTCGACGGTGAGGCCTACATCAACGTCCGCAAGGGAAAGATCATCCCCGGCTACGAGATCAGCCTCACGCTCAATTGGCACGGCGAGGCCAAGGACTCCAACGGAGCTTCGCTTCTCCAAGTCGACGGCGCCGTCGAAATTCCCTACATATCCGACGAGAATGCCGACGAGGATCCCGAGCTCAGAATCACCGTCAACGACGAAGGACCGGTAGGGAAGAGGATCAAGGACGCAATGTTTTCCAAGGGGAAGCCATTGATCTTGGAGAAGGTTAGGGTTTGGGTGCAGAGCATGGCCAGAGGCGGTCCTGTTAAAGACGAATTGGAGAAGAAGCCGGCGCCGTCTCCGTCGCCATCACCGGCGCGGCCGGCGCCGGCTCCGTCGCCGTCACCGCCCACTACGGCTGCGCCGAAGAAGGAAACTTCGACGTCTACGAAGAAGAAGGAGAAGAAGGGAGTGAAGAGTATTAGTATGACTGAGAGGTTCAATTGCAGGGCGAAGGACTTGTATGAGATATTGATGGATGAGAATAGATGGAAGGGTTTCACGCAGAGCAATGCGAGGATTAGTAAAGAGGTTGGTGGTGAGTTTAGCATTTTTGATGGATCGGTGACTGGAACTAATTTGGAGTTGCAGGAGGGTAAGTTAATTGTGCAGAAATGGAGGTTCGGAAGCTGGAACGATGGAGTTCAATCCACAGTGAGGCTTGTGTTTGAGGAGCCTGAAACGGGTGTTACGGTTGTGAAGCTGACTCATTCTGATGTGCCTGAAGAGGACAGGTACGGGAATGCAACTGTTGCGGAGAACACCGAAAGGGGGTGGCGGGATCTCATCTTCCAAAGGATACGTGCGGTTTTTGGTTTTGGAATTTGA 1068 0.5375 MARYGEGDKRWIVEDRPDGTNVHNWHWAETNCLEWSRTFFSSLLSNLTILDGEGNLFIKTTSLRSLDGEAYINVRKGKIIPGYEISLTLNWHGEAKDSNGASLLQVDGAVEIPYISDENADEDPELRITVNDEGPVGKRIKDAMFSKGKPLILEKVRVWVQSMARGGPVKDELEKKPAPSPSPSPARPAPAPSPSPPTTAAPKKETSTSTKKKEKKGVKSISMTERFNCRAKDLYEILMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELQEGKLIVQKWRFGSWNDGVQSTVRLVFEEPETGVTVVKLTHSDVPEEDRYGNATVAENTERGWRDLIFQRIRAVFGFGI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0041 355 SUPERFAMILY Activator of Hsp90 ATPase, Aha1 20 165 IPR036338 -
Vra3g0041 355 SMART Aha1_N_2 29 165 IPR015310 GO:0001671|GO:0051087
Vra3g0041 355 Pfam Activator of Hsp90 ATPase, N-terminal 29 164 IPR015310 GO:0001671|GO:0051087
Vra3g0041 355 PANTHER HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 1 355 IPR039981 GO:0001671|GO:0051879
Vra3g0041 355 Pfam Activator of Hsp90 ATPase homolog 1-like protein 231 351 IPR013538 -
Vra3g0041 355 CDD SRPBCC_Aha1 220 353 - -
Vra3g0041 355 MobiDBLite consensus disorder prediction 178 199 - -
Vra3g0041 355 Gene3D - 18 172 IPR036338 -
Vra3g0041 355 MobiDBLite consensus disorder prediction 206 221 - -
Vra3g0041 355 MobiDBLite consensus disorder prediction 167 221 - -
Vra3g0041 355 PANTHER ACTIVATOR OF 90 KDA HEAT SHOCK ATPASE-LIKE PROTEIN 1 355 - -
Vra3g0041 355 Gene3D - 218 354 IPR023393 -
Vra3g0041 355 SUPERFAMILY Bet v1-like 220 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0041 Vra-Chr3 418271 419976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0041 - - gmx:100784184 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0041 3 418271 419976 Vra3g0041 3 418271 419976 ECH
Vra3g0041 3 418271 419976 Vra8g0221 8 2676460 2679075 PCT