Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0031 ATGATGAAGGGAATCCAGATTCAGATATGTGGATTGGTAAGTCAACGATGGATTCAGAAACCCCGGGCATTCTCATCCTTCTCATTTTCCCCAATTCCACACCCTAACCCTTATTCCAAATTGCTTCCCACCAAAACCATCGTTCGTAGGGTTCGATTCGCGCCATTTCACGCTTCCTCGACACCGCTTCCTTCTGCCGGAAATGTTCGACACATTAACTTCTGTCAGTGGTGTGGTGGTTCTACGAAGAATGATATTCCCGAAGGGGAAGAAAAGTTGAGAGCTATATGTACGGTTTGTGGGAAGATTGCGTATCAGAATCCGAAGATGGTAGTTGGCTGCCTCGTTGAACATGATAACAAGGTGCTCCTTTGCAAGAGGAATATTCAACCATCTCATGGCCTTTGGACACTTCCTGCTGGTTATTTGGAAATAGGAGAGTCGGCTGTGGATGGTGCCATAAGAGAAACAAGGGAGGAAGCAAATGCAGATGTGGAAGTAATTTCACCATTTGCCCAACTGGATATTCCTTTAATTGGCCAAATTTATTTGATATTCTTGGCGAAGTTGAAGAAGCCGCATTTTTCACCTGGTCCAGAATCATCAGCATGCCAACTTTTTCCACTTGACGATATACCTTTTAATTCTCTATCCTTTTCATCGATGGTGGTTACCTTAAGTTTGTATGTTGAGGATATTAAGACTGGAAAGCTCAAATTCCATTATGGAACCATTAACAAAAGGCCGGGTACAAGTCCTTCTGATATTCGGGCCTATACGCTGGATCATCATATGCAGTCATGA 804 0.4341 MMKGIQIQICGLVSQRWIQKPRAFSSFSFSPIPHPNPYSKLLPTKTIVRRVRFAPFHASSTPLPSAGNVRHINFCQWCGGSTKNDIPEGEEKLRAICTVCGKIAYQNPKMVVGCLVEHDNKVLLCKRNIQPSHGLWTLPAGYLEIGESAVDGAIRETREEANADVEVISPFAQLDIPLIGQIYLIFLAKLKKPHFSPGPESSACQLFPLDDIPFNSLSFSSMVVTLSLYVEDIKTGKLKFHYGTINKRPGTSPSDIRAYTLDHHMQS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0031 267 ProSitePatterns Nudix box signature. 141 162 IPR020084 GO:0016787
Vra3g0031 267 Pfam Nudix N-terminal 73 106 IPR029401 -
Vra3g0031 267 PANTHER BNAA03G19740D PROTEIN 54 266 - -
Vra3g0031 267 PANTHER NUDIX HYDROLASE 23 54 266 - -
Vra3g0031 267 Pfam NUDIX domain 111 212 IPR000086 -
Vra3g0031 267 Gene3D - 70 106 - -
Vra3g0031 267 SUPERFAMILY Nudix 73 231 IPR015797 -
Vra3g0031 267 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 107 258 - -
Vra3g0031 267 ProSiteProfiles Nudix hydrolase domain profile. 107 230 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0031 Vra-Chr3 297560 301763 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0031 K18453 - gmx:100808417 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0031 3 297560 301763 Vra3g0031 3 297560 301763 ECH
Vra3g0031 3 297560 301763 Vra8g0230 8 2832682 2837830 PCT