Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g0025 ATGGGGGCTGGTGGCCGAACCTTTGTCCCTCCTTCCAACAGGAAATCAGAGGCCGACCCTCTGAAGCGGGTGCCTTTTGAAAAACCTCCTTTTAGCCTCAGCCAGATCAAGAAGGCCATACCACCTCACTGTTTTCAGCGCTCTGTTCTCCGCTCATTCTCCTATGTCATTTATGATCTAACCATAGCCTTCTGCCTCTATTATGTTGCCACCCATTACTTTCACATCCTTCCCCGACCTCTGCCTTTCCTTGCATGGCCAATCTACTGGGCTGTCCAAGGTTGTATCCTCACTGGCGTTTGGGTCATTGCTCATGAGTGTGGCCACCATGCATTCAGTGACTATCAGCTGCTTGATGATATCGTTGGCCTTATTCTCCATTCTGCTCTCCTAGTCCCATACTTTTCATGGAAATACAGCCATCGCCGTCATCACTCCAACACCGGTTCTCTCGAGCGGGATGAAGTATTTGTGCCGAAGCAGAAGTCCGGTATGCAGTGGTACTCTAAATACCTTAACAATCCACCAGGCAGAGTCCTCACACTAGTCGTCACCCTCACTCTTGGTTGGCCCATGTACCTGGCTTTTAATGTGTCAGGCAGGCCTTATCCAAGGTTTGCTTGCCACTATGATCCTTATGGTCCTATTTACTCTGATCGTGAACGACTTCAAATATATATATCAGATGTTGGAGTACTTGCAGTATGCTATGGCCTTTACCATCTTGCCATGGCTAAAGGGCTTGCCTGGGTGGTGTGTGTTTATGGAGTTCCGTTGCTAGTGGTCAATGGATTTCTGGTGTTGATTACATTCTTGCAGCATACTCACCCTGCATTACCGCACTACAATTCCTCTGAGTGGGACTGGTTGAGAGGAGCTTTGGCGACAGTTGACAGAGATTATGGAATTCTGAACAAGGTCTTCCATAATATTACAGACACTCATGTAGCACATCACTTGTTCTCCACAATGCCGCATTATCATGCAATGGAGGCCACAAAAGCAATAAGGCCCATTTTGGGAGAGTATTATCGGCTGGACGAGACTCCATTTGTGAAGGCAATGTGGAGAGAGGCAAGAGAGTGTGTTTACGTGGAGCCAGATCACGATACTGAGAACAAAGGTGTATTTTGGTACAACAATAAGTTGTGA 1152 0.4731 MGAGGRTFVPPSNRKSEADPLKRVPFEKPPFSLSQIKKAIPPHCFQRSVLRSFSYVIYDLTIAFCLYYVATHYFHILPRPLPFLAWPIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSGMQWYSKYLNNPPGRVLTLVVTLTLGWPMYLAFNVSGRPYPRFACHYDPYGPIYSDRERLQIYISDVGVLAVCYGLYHLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYNSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIRPILGEYYRLDETPFVKAMWREARECVYVEPDHDTENKGVFWYNNKL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g0025 383 CDD Delta12-FADS-like 47 329 - -
Vra3g0025 383 Pfam Fatty acid desaturase 85 345 IPR005804 GO:0006629
Vra3g0025 383 PANTHER OLEATE HYDROXYLASE FAH12 1 383 - -
Vra3g0025 383 PANTHER OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC 1 383 - -
Vra3g0025 383 MobiDBLite consensus disorder prediction 1 23 - -
Vra3g0025 383 Pfam Domain of unknown function (DUF3474) 28 66 IPR021863 GO:0016717
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g0025 Vra-Chr3 248991 254783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g0025 1 383 Lipid Metabolism Gene Families AT3G12120 75.979 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g0025 K10256 - gmx:100805040 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g0025 3 248991 254783 Vra3g0025 3 248991 254783 ECH
Vra3g0025 3 248991 254783 Vra8g0236 8 2919167 2922296 PCT