Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1519 ATGGCAGAAACTCGAGATGCCGCCGCCGCCGATGGGGTACCCGGAACGCCCGCCATAAGGGAAGTCAGACCCGAGGCAGGGAACCATGGCGGAATCGGGTCAGGCGGAATTCGGAGAGTGAATTTCCGAGCGGAGATTGACACGTCACCGCCGTTTGGATCGGTTAAAGAAGCCGTGACCCGTTTTGGAGGTAGCGGGCCTTGGATGCCGTTCTTTCAGAACAGCATTGAAGATTTTGACATAAAGAAAGTGGAGGAACAGGCAGCGGAGTTGGAAAAGGATTTGATTGTCAAAGAACTTGAAACTCTTGATGTGCTTGAAGAACTGGGAGCTACTAAGAGGATTGTGGAGGACTTGAAGCAGCAACTGCAGAAAGAGGCTATGAAATGTTTTGCATCACGAGATGTAAGTTCATATGAACAAGTTGGAACTCCTGTTATCAAGGAGATGGATAAGGAAAATTGTGGAAACAATGTCAATGATCAAGAACAGATGATGCAAATTCCAAGCCCGTGCTCTATCATGTCATCATCACCTGATATGATCTTAATGGAGTTGAAGCAAGCCAAGTTGAATTTATGCAAAACTATAAATGAACTTGGGGTGATACAGTCCTCTGTTGAGTCTTTGAACAAGAAGATGAAGAAAGAGAAAATGTTTTTGGAAAGGACACGAGAAAAGCTGGCATCGAAGTTTGCAGCAATATCTGCTCTAGAGAGGGTCCAAGAGCAGACAAAATTAAATCCTCCAGCATCTCATGTAGAATGTGCGTCAGGTAACCCTGCTAATACTGTAAGAAATTTCAATTCTGATTCCGGGCAGTGCAATAGAAAGGTTGAGACTAGAAGATCTGAACCTTCAAAGCCCTTAAGTGTGTATGAAGAATATGGATTCAGTGTTAAGACTGCTGAGATGAGGTGGCTCGCTGCTAAAAAGATGGAAGAAGCTGCAAGGGCAGCAGAATCCGTTGCTCTTGCTGAAATCAAGGCTCTATCTAATGCTGAAAGATCTTCAGGATTTGTTCTGCCAGAGCCTGAGAAAGTTAGTTTTTCTTTTGGAGATCGCTCTCCCCTAAACTCCAAGGCTCATATACCAGAGGAGTCAACTTTGAAGAAGGTAATAGATGCAAAGTTTCAAATTGATGAAACAAAAATTTCTAAACTGACTATTTTGAAGAAGTTGGAGGAAGCAACAGAGGAAGTTCTACACAGCAAACAAGTCTTGACAGATGCTTTAAACAGAGTTGAAAGTGCAAACCAAAAGCAATATGCTGCTGAGGAGGCTCTAAGGAGATGGATTCCAGAGGATGATCTCAGGAGGTATAACACTATTTATTGTAACAAGCTTAATCAAGGTGGAATCTGTCAAGATTCTCTAAATGATGTAACCAGGTCAACAACAGCAAACAATGGTCCAAAGCCAACATTAAGACCCACAATTTCTATGAGAGATGTACTTAGCAGAAAGCAGATCCCTGAAGGATATGCTACAACAAGAAAGGAGATGGAAGAGCACACTGAAAGACAAAAGGTGGCGTTGAGTCAAATGCTTCAAGCATTGAGGGAAGATCTAACTCTTCCAACAAAGACTGAGAAAGATGGGAGCAATCAGAAGCAGTTCATGCCACCGAGGAAGAAATTTGGATTCATTCAAATATCACTCCCCCCATTGACAAAACCAAGCAAGAAAAGGGCATAA 1698 0.4293 MAETRDAAAADGVPGTPAIREVRPEAGNHGGIGSGGIRRVNFRAEIDTSPPFGSVKEAVTRFGGSGPWMPFFQNSIEDFDIKKVEEQAAELEKDLIVKELETLDVLEELGATKRIVEDLKQQLQKEAMKCFASRDVSSYEQVGTPVIKEMDKENCGNNVNDQEQMMQIPSPCSIMSSSPDMILMELKQAKLNLCKTINELGVIQSSVESLNKKMKKEKMFLERTREKLASKFAAISALERVQEQTKLNPPASHVECASGNPANTVRNFNSDSGQCNRKVETRRSEPSKPLSVYEEYGFSVKTAEMRWLAAKKMEEAARAAESVALAEIKALSNAERSSGFVLPEPEKVSFSFGDRSPLNSKAHIPEESTLKKVIDAKFQIDETKISKLTILKKLEEATEEVLHSKQVLTDALNRVESANQKQYAAEEALRRWIPEDDLRRYNTIYCNKLNQGGICQDSLNDVTRSTTANNGPKPTLRPTISMRDVLSRKQIPEGYATTRKEMEEHTERQKVALSQMLQALREDLTLPTKTEKDGSNQKQFMPPRKKFGFIQISLPPLTKPSKKRA* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1519 565 Coils Coil 81 101 - -
Vra2g1519 565 Pfam Weak chloroplast movement under blue light 44 135 IPR008545 -
Vra2g1519 565 Pfam Weak chloroplast movement under blue light 184 436 IPR008545 -
Vra2g1519 565 MobiDBLite consensus disorder prediction 250 286 - -
Vra2g1519 565 MobiDBLite consensus disorder prediction 250 275 - -
Vra2g1519 565 Coils Coil 106 126 - -
Vra2g1519 565 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 1 564 - -
Vra2g1519 565 PANTHER WEB FAMILY PLANT PROTEIN 1 564 - -
Vra2g1519 565 Coils Coil 207 231 - -
Vra2g1519 565 MobiDBLite consensus disorder prediction 1 34 - -
Vra2g1519 565 Coils Coil 503 523 - -
Vra2g1519 565 MobiDBLite consensus disorder prediction 526 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1519 Vra-Chr2 23173886 23177169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1519 - - gmx:100776514 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1519 2 23173886 23177169 Vra6g0532 6 4647940 4650478 PCT