Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1506 ATGGCTAATGCGCTTCATAACGCTGCCATGTCTTTTGGTTTTCCATCCCTATCCACTCTTAGAACCATGCATAAAGATAAAAACATTGAGCTGAAAAGAATGGCTGTGGCGATTAAGGCAAAGTCTAATAGCGATTTTGATGACTCGGGCGTTGATATTTCTTTGAGTCACAGAGTTGATGCAGTGAAGCCTTCCAAAACTCTAGCCATATGTGATCACGCCACTGCTCTTTCACAATCTGGAGTTCCTGTTATTCGCTTATTTTTTGGAGAATCTGATTTTGACACTCCTGCTGTGATAGCTGAGGCTGGAATGAACGCAATTCGTGACGGTTATACCAGATATACCCCCAATGCTGGGACGTTAGAATTGCGCCAAGCAATATGTCACAAGCTAAAAGAGGAGAATGGAATTATACATTCTCCTGATCAGATTGTGGTCAGTAATGGAGCCAAGCAAAGTATTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGAGACGAGGTTATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCACGACTGGCTCATGCAACACCTGTGATTCTTCCAACCCACATACTGAATGATTTTCTTTTGGACCCCAAACTGCTAGAAGACAATCTTACAGAAAGATCCAGATTGCTTATTCTTTGTTCACCATGTAACCCAACAGGGTCTGTCTATCCTAAGAAATTACTCGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTACTGGTTCTTTCTGATGAAAATTATGAACACATAATTTATGCACCGGCAACTCATACAAGCTTTGCATCTTTACCTGGAATGCGGGACAGAACTCTAACTGTTAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTTGGGTATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATTCAAAGCCAGTTTACTTCAGGAGCAAGTAGCATATCTCAGAAAGCTGCAGTTGCTGCATTAGGATTAGGCTATGCAGGAGGAGAAGCTGTTTCTACCATGGTAAAAGCTTTCAGGGAAAGAAGGGATTTCTTGATTGAAAGCTTTAGAGACATGGACGGAGCGAGAATATGTGAACCACAGGGTGGATTCTATGTATTCATTGATTTGAGCTCTTATTATGGAAGAGAAGCCGAAGGGTTCGGTTTAATCGAAAATTCTGACTCTCTGTGTCGCTATCTGCTGGAAAAGGGCCAGGTTGCTTTGGTTCCAGGGAGTGCATTTGGAGATGATTCTTGCATCCGCATCTCTTTTGCAGAATCCCTTTCTACTTTAAACACAGCAGTAGACAGAATTAAGAATGCACTCATCTCTCTAAGCTCTTAA 1365 0.4249 MANALHNAAMSFGFPSLSTLRTMHKDKNIELKRMAVAIKAKSNSDFDDSGVDISLSHRVDAVKPSKTLAICDHATALSQSGVPVIRLFFGESDFDTPAVIAEAGMNAIRDGYTRYTPNAGTLELRQAICHKLKEENGIIHSPDQIVVSNGAKQSIVQAVLAVCSPGDEVIIPAPFYVSYPEMARLAHATPVILPTHILNDFLLDPKLLEDNLTERSRLLILCSPCNPTGSVYPKKLLEEIAQIVAKHPRLLVLSDENYEHIIYAPATHTSFASLPGMRDRTLTVNGLSKTFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLIESFRDMDGARICEPQGGFYVFIDLSSYYGREAEGFGLIENSDSLCRYLLEKGQVALVPGSAFGDDSCIRISFAESLSTLNTAVDRIKNALISLSS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1506 454 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 46 452 - -
Vra2g1506 454 Pfam Aminotransferase class I and II 84 445 IPR004839 GO:0009058|GO:0030170
Vra2g1506 454 Gene3D - 114 336 IPR015421 GO:0003824
Vra2g1506 454 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 46 452 - -
Vra2g1506 454 CDD AAT_like 85 446 - -
Vra2g1506 454 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 286 299 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vra2g1506 454 Gene3D Aspartate Aminotransferase, domain 1 68 443 IPR015422 GO:0003824
Vra2g1506 454 SUPERFAMILY PLP-dependent transferases 55 449 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1506 Vra-Chr2 23044953 23048226 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1506 K15849 - gmx:100780254 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1323 1 20660334 20663998 Vra2g1506 2 23044953 23048226 PCT