Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1323 ATGGCCAACACTCTACATAACGGTGCCAAATGCAGAATCCCTTTGAAGAACCAATCCCTGTCGATCTCTCGCCACGTTTCCGGATCCCTCTCTTTCCTTCCCAAAACACGTGTCGGAAAACAATCAAACACCTTCTCCATCAAGGCTTCGCAAGCTGACTTACCCGTTGACCCTTCCATCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACAGTCGCCATCAGCGACCTCGCCACCTCCCTCGTCCAAGCCGGCGTACCCGTCATTCGACTCGCCGCCGGGGAGCCTGATTTCGACACGCCCGCTCCCATCGCGGAGGCTGGGATCAATGCAATTCGGGAAGGTTACACGAGGTACACTCCCAATGCCGGAACCATGGAACTGCGTCAAGCGATTTGTCATAAGCTAAAAGAGGAGAATGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAACAGAGTCTTGCTCAGGCAGTACTTGCAGTTTGCTCCCCTGGAGATGAGGTCATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCAACACCTGTGATTCTTCCAACATCAATATCTGATAATTTCCTCTTAGATCCCAAACTTCTTGAATCCAAAATAACTGAAAGATCGAGACTGCTCATTCTTTGCTCTCCATCTAACCCAACTGGATCTGTCTACCCTAAGGGATTACTTGAAAAGATAGCCCAGATTGTTGCGAAGCACCCTAGGCTTCTGGTTCTCTCGGATGAAATTTATGAACACATAATTTATGCCCCAACAACTCACACTAGCTTTGCATCTTTACCGGGAATGTGGGACAGAACCCTAACTGTAAATGGATTTTCTAAGGCCTTTGCAATGACGGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCTGCATGTGGAAAGATCCAAAGTCAGTTCACTTCAGGGGCCAGTAGTATTGCCCAGAAAGCTGCAGTTGCTGCGTTAGGACTAGGTTATGCTGGTGGGGAAGCAGTTTCTACCATGGTTAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCCGAACCCCAGGGAGCATTCTATTTATTCATTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTCGGTAAAATTGAGGATTCTGAGTCCCTCTGTCGATACTTACTGGATGTTGGCCAGGTAGCCTTGGTTCCAGGGAGTGCATTTGGAGATGATACTTGCATCCGCATCTCTTATGCAGAATCCCTTACTACCCTACAGGCAGCTGTAGAAAGAATTAAGAAGGCACTCATCCCTCTAAGCTCTGCTGCACTTGTTTAA 1392 0.4698 MANTLHNGAKCRIPLKNQSLSISRHVSGSLSFLPKTRVGKQSNTFSIKASQADLPVDPSISPRVNAVKPSKTVAISDLATSLVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICHKLKEENGITYTPDQVVVSNGAKQSLAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKGLLEKIAQIVAKHPRLLVLSDEIYEHIIYAPTTHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPQGAFYLFIDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERIKKALIPLSSAALV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1323 463 CDD AAT_like 90 452 - -
Vra1g1323 463 Pfam Aminotransferase class I and II 88 450 IPR004839 GO:0009058|GO:0030170
Vra1g1323 463 Gene3D Aspartate Aminotransferase, domain 1 73 448 IPR015422 GO:0003824
Vra1g1323 463 Gene3D - 119 341 IPR015421 GO:0003824
Vra1g1323 463 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 291 304 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vra1g1323 463 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 25 458 - -
Vra1g1323 463 SUPERFAMILY PLP-dependent transferases 60 454 IPR015424 -
Vra1g1323 463 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 25 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1323 Vra-Chr1 20660334 20663998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1323 K15849 - gmx:100776446 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1323 1 20660334 20663998 Vra2g1506 2 23044953 23048226 PCT