Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1435 ATGGTGATAATCTCGTCATGGGAAAAAACGCAATACGCAACGCAACGCATCGTTTCTGTTACGGCATTCCTTACCTCACCCACCGCAACACCCAAACACCAAAACCCAACCACACTCTCCTCAACTCATATATCCTCTCAAAAGCTTCAAACTTTCGGACACAAAACATCAAAAAGCTTAGCCCTACTTTTTCTTCTCTCAATTCATCACTTCTCTTTCTTGGTTTTCCTTTTTTTTAGCTTTCCACAAAGTAAAGCCAAAGAGGGAAAGATGGCAATGATTCCGTACCAACTTTCCCGTTTACCTTACCACGATTCCCTCAAAGTACTTGAAGCTGATATACAGCACGCTAATGCTTTGGCTGCTGCAATTCCCAGAGCCAAGGGTGGGACTGTTCTTCAAATGAAATTGGTTTACAATCAGTTGGCTCCTCTCTTCCTGTTATTTCTACAATGGATGGATTGTTCTTGTGCAGGCTTTCTCCATAGGTATCTCAACCTCTTCCACATAATTATATACAAGGTACACAATGATGGTAGATCAAGCATGTCTACCCATGGAAGGAAGGCTACCATTGGGGACTTTTATGCCGTTATATTGCCATCTCTCCAAAGGCTTCATGGTAGTTTGGAGAAGTTGGAGGCTGTTGAAGCGGGAGAATCAAGCATAGAAGGTTCAAGTCATGGCAATAAGGTGATTGAAGCAAGTGGGAGACTAACCAATATTGATTTGCAAAGAGAAGATGAATGTGGAATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATCAAATGCTACCGCAAGTGGAACAGAAAATCAGAGTCTTGTCCTTTTTGTCGTGGCAGCTTGAGGAGAGTTAATTCAGAGGATCTATGGGTGCTAACTTGTGACGATGATGTTGTTGATGCTGAAACAGTTTCTAAAGAGGATCTATTGCGTTTTTACCTCTATATCAGCAAGCTGCCAAAAGATCACCCAGATGCACTTTTCCTAATGTATTATGAATACCTCATTTAA 1041 0.4188 MVIISSWEKTQYATQRIVSVTAFLTSPTATPKHQNPTTLSSTHISSQKLQTFGHKTSKSLALLFLLSIHHFSFLVFLFFSFPQSKAKEGKMAMIPYQLSRLPYHDSLKVLEADIQHANALAAAIPRAKGGTVLQMKLVYNQLAPLFLLFLQWMDCSCAGFLHRYLNLFHIIIYKVHNDGRSSMSTHGRKATIGDFYAVILPSLQRLHGSLEKLEAVEAGESSIEGSSHGNKVIEASGRLTNIDLQREDECGICLEPCTKMVLPGCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDDDVVDAETVSKEDLLRFYLYISKLPKDHPDALFLMYYEYLI* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1435 346 PANTHER RING FINGER PROTEIN 41, 151 96 346 - -
Vra2g1435 346 SMART ring_2 250 287 IPR001841 -
Vra2g1435 346 Pfam Ring finger domain 248 288 IPR001841 -
Vra2g1435 346 SUPERFAMILY RING/U-box 241 292 - -
Vra2g1435 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 298 IPR013083 -
Vra2g1435 346 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 96 346 - -
Vra2g1435 346 ProSitePatterns Zinc finger RING-type signature. 265 274 IPR017907 -
Vra2g1435 346 ProSiteProfiles Zinc finger RING-type profile. 250 288 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1435 Vra-Chr2 22458000 22460114 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1435 - - gmx:100812518 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1435 2 22458000 22460114 Vra7g0922 7 20677251 20679598 PCT