Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1420 ATGTCTCCTTCACACTTGCCTCTTCGCTGGGAGAGCACCGGAGAACAGTGGTGGTACGCTTCTCCGATCGATTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAACTTCTCCACCTCGACGCCAACCTCCTCATTAAGCTCACTTCCCTCCGCAGAATTCGGCGCCTCGAAACAGTGTGGGACGACGAGGAACACTTCGAGGACGTCGCGAAATGTCGCTCGCAGGTTGCGAGGAGCCTCATGCTGGAATGCGAGACGAGAAGAGGAACCAACTCTCTCATTCGCGCCGGGTACGGCGGGTGGCTCCTCTACACCGCCGCCTCTGCCGGTGACGTGGATTTCGTCCGGGAGCTATTGGGGAGGAACCCTGCGCTTGTGTTGGGAGAAGGAGAGTATGGAGTGACTGATATACTGTATGCTGCTGCGAGGAGCAATAGCTGTGAGGTGTTTGAGGTTGTGCTTCGTTCTGCTCTCTCGCCGGCGGCGCAGATGGAAGAGGTTTACGAGAGGGATATGACGAATAGGGCGGTTCATGCTGCTGCGAGAGGAGGGAACTGGGAGATGCTGAAGCAGCTCGTGGAAGAGGGTTGTGGTGTTTTGGGGTTTAGAGATGCTCAGGGTTGCACCGTTTTGCATACTGCAGCTGCCAGAGGACAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTCGATGTTGTAAACTCAACAGATGGTCAAGGGAACACAGCGTTACATGTAGCATCTTACGGGGGTCACTTATCTGTGGTGGAGATTCTGATTCTTGCATCCCCTTCATTAGCATTGTTAACCAACCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGAAGTCCTGGTTTCCGTAGACTGGACAAACATGCTGAACTCTTGAAGCAATTGGTTTGTGGAAAGATTGTGAACTTAGAGAACATCATCAATGCCAAGAACAATGATGGAAGAACGGTTCTTCATGTATCAGTGATTGATAATGTTCAATGCGAGCTAGTGGAACTGTTGATGTCTGTGCCATCAATTGATCTGAACATTTGTGATGCTGATGGGATGACCCCTTTGGATCTTCTAAAACAAAGACCAAAATCAGCATCTTCTGATATTTTAATCAAGATGATAATTTCCTCCGGAGGGGTCTCTAATGGTCGAAAAGCTATAGCAGAAAATGCACTTTGCACTCATCACAAAGCTCATGTCATTGGAGGGAGTCCTGGCACTTCGTTTAGAATACCAGATGCTGAGATATTCCTGTACACTGGAATTGAGAATTCATCAGATGCCAATTATGATCAAGCAAGTGTGGAATCATATTCCTGCTCGAACGAACCAAGCAATTCTGACTCGGAAAATTCTCCACACACCAAGAAGTATGATAATTCTGCTAATCGTGCTGTAAGGCGTTCGAAGTTTCGTCTCAGGTGGCCTAAAAGAAAAGAGACAAAAGCAGCTGCATCAGAATTAGAAGATGACGATTCTCTTAATCCTTTTAGTTCAAGTGGAAACTTGGAAGATTTTCCAGTTCCATTGCGGCAAAGATACTCACAACCATGCTCCCTTCCAAACAGCAAAAGAACAACTTCTCTTCCAAGTCCAACCTCCAGAGTGAAATTCAGTGCTGGTCTGATGCAAGGTGTGATTCAAGCAAAACAACATTATTCTCATTCAACTCCAAGTCCTTTCCAAGAATTATCTGTGGCTTCTCTTTCTTCCATCAAGAAACAAAAGGGTACTGATATAAAAGGACCCTCTTGCTCTAATAATCCACCATTGGAGGACAGAGAACTTCTGTTGAACTACAAACATTGCTCCCTCAATAAAAAATTGATGAATGGGTATTTTTCTTTTGGGGCACAAGGCCTGGCTGTTGAAAATTCCAATAGCTGCGCAAAGTCAAACAGGAGTTACAAGCGTTTGAGTTCCATAGTTGCCTGA 1959 0.4671 MSPSHLPLRWESTGEQWWYASPIDCAAANGHYDLVVELLHLDANLLIKLTSLRRIRRLETVWDDEEHFEDVAKCRSQVARSLMLECETRRGTNSLIRAGYGGWLLYTAASAGDVDFVRELLGRNPALVLGEGEYGVTDILYAAARSNSCEVFEVVLRSALSPAAQMEEVYERDMTNRAVHAAARGGNWEMLKQLVEEGCGVLGFRDAQGCTVLHTAAARGQVQVVRNLLASFDVVNSTDGQGNTALHVASYGGHLSVVEILILASPSLALLTNHYGDTFLHMAVAGFRSPGFRRLDKHAELLKQLVCGKIVNLENIINAKNNDGRTVLHVSVIDNVQCELVELLMSVPSIDLNICDADGMTPLDLLKQRPKSASSDILIKMIISSGGVSNGRKAIAENALCTHHKAHVIGGSPGTSFRIPDAEIFLYTGIENSSDANYDQASVESYSCSNEPSNSDSENSPHTKKYDNSANRAVRRSKFRLRWPKRKETKAAASELEDDDSLNPFSSSGNLEDFPVPLRQRYSQPCSLPNSKRTTSLPSPTSRVKFSAGLMQGVIQAKQHYSHSTPSPFQELSVASLSSIKKQKGTDIKGPSCSNNPPLEDRELLLNYKHCSLNKKLMNGYFSFGAQGLAVENSNSCAKSNRSYKRLSSIVA* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1420 652 ProSiteProfiles Ankyrin repeat region circular profile. 208 229 - -
Vra2g1420 652 MobiDBLite consensus disorder prediction 523 542 - -
Vra2g1420 652 Gene3D - 12 404 IPR036770 -
Vra2g1420 652 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 648 - -
Vra2g1420 652 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Vra2g1420 652 MobiDBLite consensus disorder prediction 458 474 - -
Vra2g1420 652 MobiDBLite consensus disorder prediction 441 457 - -
Vra2g1420 652 SMART ANK_2a 208 237 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 275 315 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 18 47 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 174 204 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 134 164 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 241 270 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 100 129 IPR002110 GO:0005515
Vra2g1420 652 SMART ANK_2a 323 354 IPR002110 GO:0005515
Vra2g1420 652 SUPERFAMILY Ankyrin repeat 104 378 IPR036770 -
Vra2g1420 652 Pfam Ankyrin repeats (3 copies) 180 262 IPR002110 GO:0005515
Vra2g1420 652 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Vra2g1420 652 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 648 - -
Vra2g1420 652 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
Vra2g1420 652 MobiDBLite consensus disorder prediction 441 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1420 Vra-Chr2 22344637 22347794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1420 105 365 Miscellaneous Gene Families AT2G31820 31.955 1.63e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g1420 - - vun:114165357 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1420 2 22344637 22347794 Vra7g0914 7 20265332 20268391 PCT