Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0948 ATGACTTGGAAGAGCAGAGGAGAATTGCCTTCAAGAAGCGTTATTTCGCAGAGATGGGCACTGTTTTTGTGCTTCGGAAGCTTCTGTGCTGGAATGCTCTTCACTACTAGGATATGGACTATTCCAGAAAACAACAAAGGACTAGCCCGACCCACAGCTGCAGAAACTGATAAATTGAATGTTGTTTCAGAAGGTTGCAATTCCAGAATTATGCAAGAATTGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTACAAGAGTCATAATTCCATTCAAACGTTGGACAAGACTATTTCAAACTTAGAGATGGAATTGGCTGCTGCAAGGGCAACTCAGGAGTCTCTACGAAGTGGTGCTCCTGTTTCAGATGATATAAGGATGAGTGAATCATCTGGTAAGAGAAAGTACCTTATGGTCATTGGTATTAATACTGCATTTAGCAGCAGGAAAAGAAGGGACTCAGTTCGTGCCACTTGGATGCCACAAGGTGAGAAAAGAAAGAAGCTAGAGGAAAAGGGTATCATCATCCGCTTTGTAATTGGACACAGTGCTACATCAGGCGGAATTCTTGACAGAGCTATTGAAGCTGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTGGAAGGATACCTTGAATTGTCAGCAAAGACAAAAACTTATTTTGCCACTGCTGTGAACTTGTGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGCAACACTGGGGGAAACTCTGGTTAGACACAGATCGAAACCACGCATATACATTGGATGCATGAAATCTGGGCCAGTCCTATCTCAAAAAGGAGTAAGATACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAACAAGTATTTCCGACATGCCACAGGGCAGTTGTATGCCATTTCAAACGATTTAGCTACATACATATCAATTAACCAGGATGTTCTTCACAAGTATGCCAACGAGGATGTCTCACTAGGATCTTGGTTTATTGGACTTGATGCGGAGCATATAGATGATAGACGACTTTGCTGTGGAACTCCTCCAGATTGTGAGTGGAAGGCCCAAGCAGGCAACATTTGTGTTGCATCGTTTGATTGGAGCTGCAGTGGAATTTGCAGGTCTGCTGAGAGGATTAAAGAGGTACATAGGAGGTGTGGAGAGGGTGAGAATGCTTTGTGGAGTGCCTCTTTCTAG 1221 0.4275 MTWKSRGELPSRSVISQRWALFLCFGSFCAGMLFTTRIWTIPENNKGLARPTAAETDKLNVVSEGCNSRIMQELEMKRDKDIYGEVYKSHNSIQTLDKTISNLEMELAAARATQESLRSGAPVSDDIRMSESSGKRKYLMVIGINTAFSSRKRRDSVRATWMPQGEKRKKLEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVNLWDADFYVKVDDDVHVNIATLGETLVRHRSKPRIYIGCMKSGPVLSQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISNDLATYISINQDVLHKYANEDVSLGSWFIGLDAEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSAERIKEVHRRCGEGENALWSASF* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0948 406 Pfam Domain of unknown function (DUF4094) 16 112 IPR025298 -
Vra2g0948 406 Coils Coil 93 113 - -
Vra2g0948 406 Gene3D - 135 348 - -
Vra2g0948 406 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 4-RELATED 7 398 - -
Vra2g0948 406 Pfam Galactosyltransferase 152 347 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vra2g0948 406 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 398 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0948 Vra-Chr2 9586694 9591228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0948 1 406 Glycosyltransferase AT1G05170 77.451 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0948 K20855 - gmx:100794838 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0948 2 9586694 9591228 Vra2g0948 2 9586694 9591228 ECH
Vra5g2747 5 34549314 34553157 Vra2g0948 2 9586694 9591228 PCT